diff options
| author | Akinori MUSHA <knu@FreeBSD.org> | 2003-08-22 22:53:54 +0000 |
|---|---|---|
| committer | Akinori MUSHA <knu@FreeBSD.org> | 2003-08-22 22:53:54 +0000 |
| commit | 0f1f27c54b938e41f0a8c08c6894aa91c25f203c (patch) | |
| tree | 68295950ae85ade89ab60e06b9d3b4c126f61909 | |
| parent | Update to 3.1.5. (diff) | |
Update to 0.5.2.
Notes
Notes:
svn path=/head/; revision=87529
| -rw-r--r-- | biology/ruby-bio/Makefile | 2 | ||||
| -rw-r--r-- | biology/ruby-bio/distinfo | 2 | ||||
| -rw-r--r-- | biology/ruby-bio/pkg-plist | 11 |
3 files changed, 13 insertions, 2 deletions
diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile index b6d25a67c4fe..0363de420f24 100644 --- a/biology/ruby-bio/Makefile +++ b/biology/ruby-bio/Makefile @@ -6,7 +6,7 @@ # PORTNAME= bio -PORTVERSION= 0.5.1 +PORTVERSION= 0.5.2 CATEGORIES= biology ruby MASTER_SITES= ftp://ftp.bioruby.org/bioruby/ MASTER_SITE_SUBDIR= knu diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo index c2dbe715f3d6..11d62b73eb77 100644 --- a/biology/ruby-bio/distinfo +++ b/biology/ruby-bio/distinfo @@ -1 +1 @@ -MD5 (ruby/bioruby-0.5.1.tar.gz) = 77bfd08d3bf01e1a060f6826d08ba258 +MD5 (ruby/bioruby-0.5.2.tar.gz) = 69d15dc333713ebd89ac645dd5ca4578 diff --git a/biology/ruby-bio/pkg-plist b/biology/ruby-bio/pkg-plist index 38c98bc22f06..2604e94d5bbd 100644 --- a/biology/ruby-bio/pkg-plist +++ b/biology/ruby-bio/pkg-plist @@ -6,11 +6,17 @@ etc/bioinformatics/seqdatabase.ini.sample @exec [ ! -f %B/etc/bioinformatics/seqdatabase.ini ] && cp %B/%f %B/etc/bioinformatics/seqdatabase.ini @dirrm etc/bioinformatics %%RUBY_SITELIBDIR%%/bio.rb +%%RUBY_SITELIBDIR%%/bio/alignment.rb +%%RUBY_SITELIBDIR%%/bio/appl/alignfactory.rb %%RUBY_SITELIBDIR%%/bio/appl/blast.rb +%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb +%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb %%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb +%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb +%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb %%RUBY_SITELIBDIR%%/bio/appl/emboss.rb %%RUBY_SITELIBDIR%%/bio/appl/fasta.rb %%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb @@ -18,6 +24,8 @@ etc/bioinformatics/seqdatabase.ini.sample %%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb %%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb %%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb +%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb +%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb %%RUBY_SITELIBDIR%%/bio/appl/psort.rb %%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb %%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb @@ -86,9 +94,11 @@ etc/bioinformatics/seqdatabase.ini.sample @dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp @dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui @dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort +@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft @dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer @dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan @dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta +@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw @dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast @dirrm %%RUBY_SITELIBDIR%%/bio/appl @dirrm %%RUBY_SITELIBDIR%%/bio @@ -117,6 +127,7 @@ etc/bioinformatics/seqdatabase.ini.sample %%PORTDOCS%%%%RUBY_MODDOCDIR%%/README %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/BioRuby.rd.ja %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Design.rd.ja +%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/TODO.rd.ja %%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja %%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja |