diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2017-12-02 20:46:28 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2017-12-02 20:46:28 +0000 |
| commit | 9956039fdd1611d65ef0db3af37c29b4e66902d0 (patch) | |
| tree | 0a6bd8d5ff15762dafd691285ae5b6355ca998ff | |
| parent | [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ... (diff) | |
[new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP) sequences
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13322
Notes
Notes:
svn path=/head/; revision=455383
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/py-macs2/Makefile | 31 | ||||
| -rw-r--r-- | biology/py-macs2/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-macs2/pkg-descr | 6 |
4 files changed, 41 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index bfcf12b297d1..e72db4dfe68b 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -88,6 +88,7 @@ SUBDIR += py-biopython SUBDIR += py-bx-python SUBDIR += py-cutadapt + SUBDIR += py-macs2 SUBDIR += py-pysam SUBDIR += pycogent SUBDIR += pyfasta diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile new file mode 100644 index 000000000000..5fd3fa1567ae --- /dev/null +++ b/biology/py-macs2/Makefile @@ -0,0 +1,31 @@ +# $FreeBSD$ + +PORTNAME= macs2 +PORTVERSION= 2.1.0.p20170505 +CATEGORIES= biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Analysis of chromatin immunoprecipitation (ChIP) sequences + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist concurrent cython distutils + +USE_GITHUB= yes +GH_ACCOUNT= taoliu +GH_PROJECT= MACS +GH_TAGNAME= 6946b2f + +PYSETUP= setup_w_cython.py + +post-stage: + ${STRIP_CMD} \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so + +.include <bsd.port.mk> diff --git a/biology/py-macs2/distinfo b/biology/py-macs2/distinfo new file mode 100644 index 000000000000..e6e69444c3c6 --- /dev/null +++ b/biology/py-macs2/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1512241922 +SHA256 (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = c6e4fb8b69b955134399fcdfc075cea5fbc29fabbc46cc4e9acdedeb1174fcfd +SIZE (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = 159560613 diff --git a/biology/py-macs2/pkg-descr b/biology/py-macs2/pkg-descr new file mode 100644 index 000000000000..c101167de737 --- /dev/null +++ b/biology/py-macs2/pkg-descr @@ -0,0 +1,6 @@ +MACS is a tool for chromatin immunoprecipitation (ChIP) sequence analysis. +MACS empirically models the length of the sequenced ChIP fragments, which +tend to be shorter than sonication or library construction size estimates, +and uses it to improve the spatial resolution of predicted binding sites. + +WWW: https://github.com/taoliu/MACS |