diff options
author | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2014-05-03 00:55:30 +0000 |
---|---|---|
committer | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2014-05-03 00:55:30 +0000 |
commit | 095fbe3e1ac5c36839609020469db604066f1593 (patch) | |
tree | 0a69cd254580d4d21a13477bb17d8668bd96aeaa | |
parent | Add a port for Leiningen: Clojure project automation. (diff) |
- Update to 1.8.12 (from science/hdf5-18)
- Add LICENSE
- Convert to new LIB_DEPENDS format
- Convert to new options helper
- Use NOT_FOR_ARCHS
- Strip shared library
- Remove deprecated PTHREAD_*
- Use MAKE_CMD
- Bump PORTREVISION for science/hdf5 shlib change [1]
Changes: http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by: portmgr (bapt) [1]
Notes
Notes:
svn path=/head/; revision=352854
34 files changed, 176 insertions, 351 deletions
diff --git a/devel/py-tables/Makefile b/devel/py-tables/Makefile index db561c3bb7f1..adf7d19d8e84 100644 --- a/devel/py-tables/Makefile +++ b/devel/py-tables/Makefile @@ -3,7 +3,7 @@ PORTNAME= tables PORTVERSION= 3.0.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= devel python MASTER_SITES= SF/py${PORTNAME:L}/py${PORTNAME}/${PORTVERSION} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -16,9 +16,9 @@ COMMENT= Hierarchical database for Python BUILD_DEPENDS= ${PYNUMPY} \ ${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \ ${PYTHON_PKGNAMEPREFIX}numexpr>=1.4.1:${PORTSDIR}/math/py-numexpr -LIB_DEPENDS= hdf5:${PORTSDIR}/science/hdf5-18 \ - lzo2:${PORTSDIR}/archivers/lzo2 \ - ucl:${PORTSDIR}/archivers/ucl +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ + liblzo2.so:${PORTSDIR}/archivers/lzo2 \ + libucl.so:${PORTSDIR}/archivers/ucl RUN_DEPENDS:= ${BUILD_DEPENDS} USE_PYTHON= yes diff --git a/french/aster/Makefile b/french/aster/Makefile index a63e0857877f..9fc95938205e 100644 --- a/french/aster/Makefile +++ b/french/aster/Makefile @@ -3,6 +3,7 @@ PORTNAME= aster DISTVERSION= ${ASTER_DISTVERSION} +PORTREVISION= 1 CATEGORIES= french cad MAINTAINER= thierry@FreeBSD.org @@ -35,7 +36,7 @@ BUILD_DEPENDS+= ${LOCALBASE}/aster/ASTK/ASTK_SERV:${PORTSDIR}/cad/astk-serveur \ ${SHELL_INSTALL_ASTER}:${PORTSDIR}/shells/${SHIADEP} \ ${LOCALBASE}/lib/libscotch.a:${PORTSDIR}/cad/scotch \ ${PYNUMPY} -LIB_DEPENDS+= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 \ +LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 \ libmed.so:${PORTSDIR}/french/med \ libmetis.so.0:${PORTSDIR}/math/metis-edf RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/Gnuplot:${PORTSDIR}/math/py-gnuplot \ diff --git a/french/med/Makefile b/french/med/Makefile index 8cf2a6ca725a..9244c4f04b98 100644 --- a/french/med/Makefile +++ b/french/med/Makefile @@ -3,7 +3,7 @@ PORTNAME= med DISTVERSION= 3.0.7 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= french science MAINTAINER= thierry@FreeBSD.org @@ -11,7 +11,7 @@ COMMENT= Modelisation et Echanges de Donnees LICENSE= GPLv3 -LIB_DEPENDS= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} diff --git a/graphics/gdal/Makefile b/graphics/gdal/Makefile index 19e959fa870c..83bd2e85b054 100644 --- a/graphics/gdal/Makefile +++ b/graphics/gdal/Makefile @@ -3,6 +3,7 @@ PORTNAME= gdal PORTVERSION= 1.11.0 +PORTREVISION= 1 CATEGORIES= graphics geography MASTER_SITES= http://download.osgeo.org/gdal/${PORTVERSION}/ \ ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \ @@ -68,7 +69,7 @@ GTA_CONFIGURE_ON= --with-gta=${LOCALBASE} GTA_LIB_DEPENDS= libgta.so:${PORTSDIR}/devel/libgta HDF5_CONFIGURE_OFF= --with-hdf5=no HDF5_CONFIGURE_ON= --with-hdf5=${LOCALBASE} -HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5-18 +HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 ICONV_CONFIGURE_OFF= --with-libiconv-prefix=no ICONV_CONFIGURE_ON= ${ICONV_CONFIGURE_ARG} ICONV_LDFLAGS= -L${ICONV_PREFIX}/lib ${ICONV_LIB} diff --git a/graphics/openimageio/Makefile b/graphics/openimageio/Makefile index 56594356eef2..2f074cc8a2ec 100644 --- a/graphics/openimageio/Makefile +++ b/graphics/openimageio/Makefile @@ -3,7 +3,7 @@ PORTNAME= openimageio PORTVERSION= 1.3.9 -PORTREVISION?= 1 +PORTREVISION?= 2 CATEGORIES?= graphics multimedia MAINTAINER?= FreeBSD@Shaneware.biz @@ -39,7 +39,7 @@ OCIO_DESC= Colour management support .if ${SLAVE_PORT} == no LIB_DEPENDS= libIlmImf.so:${PORTSDIR}/graphics/OpenEXR \ libboost_thread.so:${PORTSDIR}/devel/boost-libs \ - libhdf5.so:${PORTSDIR}/science/hdf5-18 \ + libhdf5.so:${PORTSDIR}/science/hdf5 \ libopencv_legacy.so:${PORTSDIR}/graphics/opencv \ libopenjpeg.so:${PORTSDIR}/graphics/openjpeg \ libwebp.so:${PORTSDIR}/graphics/webp diff --git a/graphics/vigra/Makefile b/graphics/vigra/Makefile index f18c56dd6e8d..a3a337b010e8 100644 --- a/graphics/vigra/Makefile +++ b/graphics/vigra/Makefile @@ -3,7 +3,7 @@ PORTNAME= vigra PORTVERSION= 1.9.0 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= graphics MASTER_SITES= http://hci.iwr.uni-heidelberg.de/vigra/ DISTNAME= ${PORTNAME}-${PORTVERSION}-src @@ -29,7 +29,7 @@ NUMPY_DESC= NumPy mathematical computing (USE Fortran/GCC46+) .if ${PORT_OPTIONS:MHDF5} CMAKE_ARGS+= -DWITH_HDF5=1 -LIB_DEPENDS+= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 +LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 .else CMAKE_ARGS+= -DWITH_HDF5=0 .endif @@ -50,7 +50,7 @@ USE_PYTHON= 2 BUILD_DEPENDS+= nosetests:${PORTSDIR}/devel/py-nose BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/numpy/core/numeric.py:${PORTSDIR}/math/py-numpy #BUILD_DEPENDS+= sphinx-build:${PORTSDIR}/textproc/py-sphinx -LIB_DEPENDS= libboost_python.so:${PORTSDIR}/devel/boost-python-libs +LIB_DEPENDS+= libboost_python.so:${PORTSDIR}/devel/boost-python-libs RUN_DEPENDS:= ${BUILD_DEPENDS} PLIST_SUB+= PYTHON="" .else diff --git a/math/labplot/Makefile b/math/labplot/Makefile index 78ad8d6336a4..2cffdbfa81b5 100644 --- a/math/labplot/Makefile +++ b/math/labplot/Makefile @@ -3,7 +3,7 @@ PORTNAME= labplot DISTVERSION= 2.0.0.beta2 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math kde MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTVERSION:R} diff --git a/math/matio/Makefile b/math/matio/Makefile index a84a543d9c74..b974e122a985 100644 --- a/math/matio/Makefile +++ b/math/matio/Makefile @@ -3,7 +3,7 @@ PORTNAME= matio PORTVERSION= 1.5.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= SF @@ -21,7 +21,7 @@ OPTIONS_DEFINE= HDF5 OPTIONS_DEFAULT= HDF5 HDF5_DESC= Support for MAT file version 7.3 -HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5-18 +HDF5_LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 HDF5_CONFIGURE_ON= --enable-mat73=yes \ --with-hdf5=${LOCALBASE} diff --git a/math/octave/Makefile b/math/octave/Makefile index 019990a34c01..510b10d38e6d 100644 --- a/math/octave/Makefile +++ b/math/octave/Makefile @@ -3,7 +3,7 @@ PORTNAME= octave PORTVERSION= 3.8.0 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_GNU} MASTER_SITE_SUBDIR= octave @@ -27,7 +27,7 @@ LIB_DEPENDS= GraphicsMagick.14:${PORTSDIR}/graphics/GraphicsMagick13 \ fftw3f:${PORTSDIR}/math/fftw3-float \ fltk.1:${PORTSDIR}/x11-toolkits/fltk \ ftgl:${PORTSDIR}/graphics/ftgl \ - hdf5:${PORTSDIR}/science/hdf5-18 \ + libhdf5.so:${PORTSDIR}/science/hdf5 \ pcre.3:${PORTSDIR}/devel/pcre \ qhull.5:${PORTSDIR}/math/qhull5 \ qrupdate:${PORTSDIR}/math/qrupdate \ diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile index ceeea807d19b..f38fb459be54 100644 --- a/science/cgnslib/Makefile +++ b/science/cgnslib/Makefile @@ -3,6 +3,7 @@ PORTNAME= cgnslib DISTVERSION= 3.2.1 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= science MASTER_SITES= SF/cgns/${PORTNAME}_${PORTVERSION:R}/ @@ -31,7 +32,7 @@ OPTIONS_DEFAULT=HDF5 TESTS TOOLS .include <bsd.port.options.mk> .if ${PORT_OPTIONS:MHDF5} -LIB_DEPENDS+= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 +LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 CMAKE_ARGS+= -DCGNS_ENABLE_HDF5:BOOL=TRUE -DHDF5_NEED_ZLIB:BOOL=TRUE \ -DHDF5_INCLUDE_PATH:PATH="${LOCALBASE}/include" PLIST_SUB= HDF5="" diff --git a/science/ecs/Makefile b/science/ecs/Makefile index cdc0defe1f62..83a171190dfc 100644 --- a/science/ecs/Makefile +++ b/science/ecs/Makefile @@ -3,7 +3,7 @@ PORTNAME= ecs PORTVERSION= 2.0.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/ DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g} @@ -15,7 +15,7 @@ LICENSE= GPLv2 LIB_DEPENDS= libmed.so:${PORTSDIR}/french/med \ libbft.so:${PORTSDIR}/science/bft \ - libhdf5.so.7:${PORTSDIR}/science/hdf5-18\ + libhdf5.so:${PORTSDIR}/science/hdf5 \ libcgns.so:${PORTSDIR}/science/cgnslib WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} diff --git a/science/fvm/Makefile b/science/fvm/Makefile index 66907d0227c8..6d3e29e26d2d 100644 --- a/science/fvm/Makefile +++ b/science/fvm/Makefile @@ -3,7 +3,7 @@ PORTNAME= fvm PORTVERSION= 0.15.3 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science parallel MASTER_SITES= http://research.edf.com/fichiers/fckeditor/Commun/Innovation/logiciels/code_saturne/Releases/ DISTNAME= ${PORTNAME}-${PORTVERSION:S/.//g} @@ -15,7 +15,7 @@ LICENSE= LGPL21 LIB_DEPENDS= libmed.so:${PORTSDIR}/french/med \ libbft.so:${PORTSDIR}/science/bft \ - libhdf5.so.7:${PORTSDIR}/science/hdf5-18\ + libhdf5.so:${PORTSDIR}/science/hdf5 \ libcgns.so:${PORTSDIR}/science/cgnslib WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index c25ef99e7da2..cf0fabbecc1d 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -3,7 +3,7 @@ PORTNAME= gnudatalanguage DISTVERSION= 0.9.4 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science lang MASTER_SITES= SF/${PORTNAME}/gdl/${DISTVERSION} .if defined(BUILD_PYTHON_MODULE) @@ -16,8 +16,6 @@ COMMENT?= GDL, a free IDL compatible incremental compiler LICENSE= GPLv2 -#NO_STAGE= yes - #--------------------------------------------------------------------------- # You may define these options: # @@ -72,7 +70,7 @@ CMAKE_ARGS+= -DGRAPHICSMAGICK:BOOL=NO .endif .if !defined(WITHOUT_HDF5) -LIB_DEPENDS+= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 +LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 CMAKE_ARGS+= -DHDF5:BOOL=YES .else CMAKE_ARGS+= -DHDF5:BOOL=NO diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile index dc10ea1afc0d..c1196c898983 100644 --- a/science/h5utils/Makefile +++ b/science/h5utils/Makefile @@ -3,7 +3,7 @@ PORTNAME= h5utils PORTVERSION= 1.12.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/${PORTNAME}/ @@ -21,9 +21,9 @@ CFLAGS += -L${LOCALBASE}/lib -I${LOCALBASE}/include \ -I${LOCALBASE}/include/libpng15 ${PTHREAD_LIBS} BUILD_DEPENDS+= gawk:${PORTSDIR}/lang/gawk -LIB_DEPENDS += hdf5:${PORTSDIR}/science/hdf5 \ - png15:${PORTSDIR}/graphics/png \ - matheval.1:${PORTSDIR}/devel/libmatheval +LIB_DEPENDS+= libhdf5.so:${PORTSDIR}/science/hdf5 \ + libpng15.so:${PORTSDIR}/graphics/png \ + libmatheval.so:${PORTSDIR}/devel/libmatheval NO_STAGE= yes .include <bsd.port.mk> diff --git a/science/hdf-java/Makefile b/science/hdf-java/Makefile index 2e6652d48480..f965fc2b8c9b 100644 --- a/science/hdf-java/Makefile +++ b/science/hdf-java/Makefile @@ -3,6 +3,7 @@ PORTNAME= hdf-java PORTVERSION= 2.10 +PORTREVISION= 1 CATEGORIES= science java MASTER_SITES= http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdf-java-${PORTVERSION}/src/ DISTNAME= ${PORTNAME}-${PORTVERSION}-source @@ -10,7 +11,7 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}-source MAINTAINER= ports@FreeBSD.org COMMENT= Java interface to HDF5 -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5-18 \ +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ libjpeg.so:${PORTSDIR}/graphics/jpeg USE_JAVA= yes @@ -33,7 +34,7 @@ CONFIGURE_ARGS= --with-jdk=${JAVA_HOME}/include,${JAVA_HOME}/jre/lib/ \ USE_LDCONFIG= yes OPTIONS_DEFINE= SZIP DOCS -SZIP_DESC= SZIP support (must match with science/hdf5-18) +SZIP_DESC= SZIP support (must match with science/hdf5) .include <bsd.port.options.mk> diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile index 5d3fe73fd395..dfe2ba73614b 100644 --- a/science/hdf5/Makefile +++ b/science/hdf5/Makefile @@ -2,74 +2,61 @@ # $FreeBSD$ PORTNAME= hdf5 -PORTVERSION= 1.6.9 -PORTREVISION= 2 +PORTVERSION= 1.8.12 CATEGORIES= science archivers graphics -MASTER_SITES= ftp://ftp.hdfgroup.org/HDF5/current16/src/ \ - ftp://ftp.hdfgroup.org/HDF5/prev-releases/ \ - ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/ \ - LOCAL/chinsan +MASTER_SITES= http://www.hdfgroup.org/ftp/HDF5/current/src/ \ + ftp://ftp.hdfgroup.org/HDF5/current/src/ \ + http://www.hdfgroup.org/ftp/HDF5/releases/${DISTNAME}/src/ \ + ftp://ftp.hdfgroup.org/HDF5/releases/${DISTNAME}/src/ +#DISTNAME= ${PORTNAME}-${PORTVERSION}-patch1 MAINTAINER= sunpoet@FreeBSD.org COMMENT= Hierarchical Data Format library (from NCSA) -CONFLICTS= hdf5-1.8.* +LICENSE= BSD4CLAUSE -USE_LDCONFIG= yes -USE_AUTOTOOLS= libtool -GNU_CONFIGURE= yes -LIBTOOLFILES= configure c++/configure -CONFIGURE_ARGS= --disable-debug \ - --enable-cxx \ +CONFLICTS_INSTALL= hdf-4.[0-9]* hdf5-1.6.[0-9]* + +OPTIONS_DEFINE= DEBUG EXAMPLES FORTRAN SZIP +OPTIONS_SUB= yes + +CFLAGS+= -D__BSD_VISIBLE +CONFIGURE_ARGS= --enable-cxx \ + --enable-hl \ --enable-instrument \ - --enable-production \ --enable-strict-format-checks \ - --enable-threadsafe \ --with-pthread=/usr \ - --with-ssl=/usr \ --with-zlib=/usr -ALL_TARGET= lib progs -MAKE_JOBS_UNSAFE= yes +GNU_CONFIGURE= yes +MAKE_ENV= INSTALL_STRIP_FLAG=${STRIP} +USE_LDCONFIG= yes +USES= libtool tar:bzip2 -.include <bsd.port.pre.mk> +PORTEXAMPLES= * -.if defined(WITH_FORTRAN) -LIBTOOLFILES+= fortran/configure -USES+= fortran -CONFIGURE_ENV+= F9X=${FC} -CONFIGURE_ARGS+= --enable-fortran -PLIST_SUB+= FORTRAN="" -.else -PLIST_SUB+= FORTRAN="@comment " -.endif +NOT_FOR_ARCHS= sparc64 +NOT_FOR_ARCHS_REASON= does not compile -.if ${ARCH} == "sparc64" -BROKEN= Does not compile on ${ARCH} -.endif +DEBUG_CONFIGURE_OFF= --enable-production +DEBUG_CONFIGURE_ON= --disable-production --enable-debug=all +FORTRAN_CONFIGURE_ENV= F9X=${FC} +FORTRAN_CONFIGURE_OFF= --disable-fortran --disable-fortran2003 +FORTRAN_CONFIGURE_ON= --enable-fortran --enable-fortran2003 +FORTRAN_USES= fortran +SZIP_CONFIGURE_ARGS= --with-szlib=${LOCALBASE} +SZIP_LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip post-patch: - @${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|-D_THREAD_SAFE|${PTHREAD_CFLAGS}|g' \ - -e 's|[\$$]LDFLAGS -pthread|\$$LDFLAGS ${PTHREAD_LIBS}|g' \ - ${WRKSRC}/config/freebsd ${WRKSRC}/c++/config/freebsd + @${REINPLACE_CMD} -e 's|-lpthread|-pthread|g' ${WRKSRC}/configure @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags - @${REINPLACE_CMD} -e 's|objformat=|#objformat=|g' \ - -e 's|\(version_type=freebsd\)-.*|\1-elf|g' \ - ${WRKSRC}/aclocal.m4 ${WRKSRC}/configure -.if defined(NOPORTEXAMPLES) -.for i in . c++ hl fortran @${REINPLACE_CMD} \ - -e 's,\((cd examples && $$(MAKE) $$@) || exit 1;\),#\1,g' \ - ${WRKSRC}/${i}/Makefile.in -.endfor -.endif - -post-install: -.for i in gif2h5 h52gif h5debug h5diff h5dump h5import h5jam h5ls h5repack h5repart h5unjam - @${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/${i} -.endfor + -e '/LD_LIBRARY_PATH/ s|^|#|' \ + -e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \ + -e 's|(INSTALL)|(INSTALL_DATA)|' \ + `${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'` + @${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*` -regression-test: build - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check +regression-test test: build + cd ${WRKSRC}/ && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check -.include <bsd.port.post.mk> +.include <bsd.port.mk> diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo index c514ccfccc06..877852712bd7 100644 --- a/science/hdf5/distinfo +++ b/science/hdf5/distinfo @@ -1,2 +1,2 @@ -SHA256 (hdf5-1.6.9.tar.gz) = 15ff93cbbf40c2c9a84638e53f8b0dfe7e92b142b337702a300c7db106fce89b -SIZE (hdf5-1.6.9.tar.gz) = 5451465 +SHA256 (hdf5-1.8.12.tar.bz2) = 6d080f913a226a3ce390a11d9b571b2d5866581a2aa4434c398cd371c7063639 +SIZE (hdf5-1.8.12.tar.bz2) = 5994832 diff --git a/science/hdf5/files/patch-Makefile.in b/science/hdf5/files/patch-Makefile.in deleted file mode 100644 index f2dc8dd97cf4..000000000000 --- a/science/hdf5/files/patch-Makefile.in +++ /dev/null @@ -1,11 +0,0 @@ ---- Makefile.in.orig 2009-05-01 02:23:03.000000000 +0000 -+++ Makefile.in -@@ -93,7 +93,7 @@ uninstall-all: - @$(MAKE) uninstall-doc - - install: -- @@SETX@; for d in $(SUBDIRS) perform; do \ -+ @@SETX@; for d in $(SUBDIRS); do \ - (cd $$d && $(MAKE) $@) || exit 1; \ - done - @$(MAKE) install-examples diff --git a/science/hdf5/files/patch-c++::commence.in b/science/hdf5/files/patch-c++::commence.in deleted file mode 100644 index 393adc30cc0f..000000000000 --- a/science/hdf5/files/patch-c++::commence.in +++ /dev/null @@ -1,31 +0,0 @@ ---- c++/config/commence.in.orig Mon Jun 30 16:19:35 2003 -+++ c++/config/commence.in Mon Oct 20 23:44:08 2003 -@@ -27,7 +27,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - TRACE=: - -@@ -37,7 +37,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Obtain default library; the current version of libtool does not fully -@@ -60,8 +60,8 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) --EXAMPLEDIR=$(docdir)/hdf5/examples/c++ -+DOCDIR=$(docdir)/doc/hdf5 -+EXAMPLEDIR=$(docdir)/examples/hdf5/c++ - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5/files/patch-commence.in b/science/hdf5/files/patch-commence.in deleted file mode 100644 index 0795dcb37f66..000000000000 --- a/science/hdf5/files/patch-commence.in +++ /dev/null @@ -1,32 +0,0 @@ ---- config/commence.in.orig Tue Jul 22 23:39:43 2003 -+++ config/commence.in Mon Oct 20 23:45:00 2003 -@@ -26,7 +26,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - RUNSERIAL=@RUNSERIAL@ - RUNPARALLEL=@RUNPARALLEL@ -@@ -39,7 +39,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Shared libraries -@@ -57,9 +57,9 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) -+DOCDIR=$(docdir)/doc/hdf5 - SUBDOCDIR= --EXAMPLEDIR=$(docdir)/hdf5/examples/c -+EXAMPLEDIR=$(docdir)/examples/hdf5/c - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5/files/patch-fortran_H5f90i.h b/science/hdf5/files/patch-fortran_H5f90i.h deleted file mode 100644 index 83f5855b8993..000000000000 --- a/science/hdf5/files/patch-fortran_H5f90i.h +++ /dev/null @@ -1,11 +0,0 @@ ---- fortran/src/H5f90i.h.orig Thu Jul 12 21:26:46 2007 -+++ fortran/src/H5f90i.h Thu Jul 12 21:27:18 2007 -@@ -71,7 +71,7 @@ - #endif /*APPLE*/ - - /* LINUX definitions */ --#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__)) -+#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__) || defined(__FreeBSD__)) - - /* Common definitions */ - typedef char *_fcd; diff --git a/science/hdf5/files/patch-fortran_commence.in b/science/hdf5/files/patch-fortran_commence.in deleted file mode 100644 index 3331f07ce406..000000000000 --- a/science/hdf5/files/patch-fortran_commence.in +++ /dev/null @@ -1,31 +0,0 @@ ---- fortran/config/commence.in.orig Thu Jul 12 21:28:40 2007 -+++ fortran/config/commence.in Thu Jul 12 21:33:56 2007 -@@ -47,7 +47,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - PARALLEL=@PARALLEL@ - RUNSERIAL=@RUNSERIAL@ -@@ -62,7 +62,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Shared libraries -@@ -85,8 +85,8 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) --EXAMPLEDIR=$(docdir)/hdf5/examples/fortran -+DOCDIR=$(docdir)/doc/hdf5 -+EXAMPLEDIR=$(docdir)/examples/hdf5/fortran - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5/files/patch-fortran_configure b/science/hdf5/files/patch-fortran_configure deleted file mode 100644 index 7244f4e4f10a..000000000000 --- a/science/hdf5/files/patch-fortran_configure +++ /dev/null @@ -1,10 +0,0 @@ ---- fortran/configure.orig Thu Jul 12 21:36:24 2007 -+++ fortran/configure Thu Jul 12 21:36:49 2007 -@@ -7602,6 +7602,7 @@ - - # This can be used to rebuild libtool when needed - LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh" -+$ac_aux_dir/ltconfig $LIBTOOL_DEPS - - # Always use our own libtool. - LIBTOOL='$(SHELL) $(top_builddir)/libtool' diff --git a/science/hdf5/files/patch-fortran_freebsd b/science/hdf5/files/patch-fortran_freebsd deleted file mode 100644 index 329de570663c..000000000000 --- a/science/hdf5/files/patch-fortran_freebsd +++ /dev/null @@ -1,23 +0,0 @@ ---- fortran/config/freebsd.orig Thu Jul 12 21:23:06 2007 -+++ fortran/config/freebsd Thu Jul 12 21:25:09 2007 -@@ -27,3 +27,20 @@ - - # Figure out compiler flags - . $srcdir/config/gnu-flags -+ -+# -+# HDF5 integers -+# -+# R_LARGE is the number of digits for the bigest integer supported. -+# R_INTEGER is the number of digits in INTEGER -+# -+# (for the Linux architechture) -+# -+R_LARGE=18 -+R_INTEGER=9 -+HADDR_T='SELECTED_INT_KIND(R_LARGE)' -+HSIZE_T='SELECTED_INT_KIND(R_LARGE)' -+HSSIZE_T='SELECTED_INT_KIND(R_LARGE)' -+HID_T='SELECTED_INT_KIND(R_INTEGER)' -+SIZE_T='SELECTED_INT_KIND(R_INTEGER)' -+OBJECT_NAMELEN_DEFAULT_F=-1 diff --git a/science/hdf5/pkg-descr b/science/hdf5/pkg-descr index 35a0fc9e23cf..2e3e3061d5c7 100644 --- a/science/hdf5/pkg-descr +++ b/science/hdf5/pkg-descr @@ -1,17 +1,16 @@ -HDF5 is a completely new Hierarchical Data Format product consisting of a -data format specification and a supporting library implementation. HDF5 is -designed to address some of the limitations of the older HDF product and to -address current and anticipated requirements of modern systems and -applications. +HDF5 is a completely new Hierarchical Data Format product consisting of a data +format specification and a supporting library implementation. HDF5 is designed +to address some of the limitations of the older HDF product and to address +current and anticipated requirements of modern systems and applications. -HDF5 includes the following improvements. - - A new file format designed to address some of the deficiencies of HDF4.x, - particularly the need to store larger files and more objects per file. - - A simpler, more comprehensive data model that includes only two basic - structures: a multidimensional array of record structures, and a grouping - structure. - - A simpler, better-engineered library and API, with improved support for - parallel I/O, threads, and other requirements imposed by modern systems - and applications. +HDF5 includes the following improvements: +- A new file format designed to address some of the deficiencies of HDF4.x, + particularly the need to store larger files and more objects per file. +- A simpler, more comprehensive data model that includes only two basic + structures: a multidimensional array of record structures, and a grouping + structure. +- A simpler, better-engineered library and API, with improved support for + parallel I/O, threads, and other requirements imposed by modern systems + and applications. -WWW: http://hdf.ncsa.uiuc.edu/HDF5/ +WWW: http://www.hdfgroup.org/HDF5/ diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist index ba8217caef46..c4cc3fc7c4ef 100644 --- a/science/hdf5/pkg-plist +++ b/science/hdf5/pkg-plist @@ -2,6 +2,7 @@ bin/gif2h5 bin/h52gif bin/h5c++ bin/h5cc +bin/h5copy bin/h5debug bin/h5diff bin/h5dump @@ -9,9 +10,12 @@ bin/h5dump bin/h5import bin/h5jam bin/h5ls +bin/h5mkgrp +bin/h5perf_serial bin/h5redeploy bin/h5repack bin/h5repart +bin/h5stat bin/h5unjam include/H5ACpublic.h include/H5AbstractDs.h @@ -19,13 +23,14 @@ include/H5Apublic.h include/H5ArrayType.h include/H5AtomType.h include/H5Attribute.h -include/H5Bpublic.h include/H5Classes.h include/H5CommonFG.h include/H5CompType.h include/H5Cpp.h include/H5CppDoc.h include/H5Cpublic.h +include/H5DOpublic.h +include/H5DSpublic.h include/H5DataSet.h include/H5DataSpace.h include/H5DataType.h @@ -33,9 +38,11 @@ include/H5DcreatProp.h include/H5Dpublic.h include/H5DxferProp.h include/H5EnumType.h +include/H5Epubgen.h include/H5Epublic.h include/H5Exception.h include/H5FDcore.h +include/H5FDdirect.h include/H5FDfamily.h include/H5FDlog.h include/H5FDmpi.h @@ -52,115 +59,94 @@ include/H5FloatType.h include/H5Fpublic.h include/H5Gpublic.h include/H5Group.h -include/H5HGpublic.h -include/H5HLpublic.h -include/H5IM.h +include/H5IMpublic.h include/H5IdComponent.h include/H5Include.h include/H5IntType.h include/H5Ipublic.h -include/H5LT.h +include/H5LTpublic.h include/H5Library.h +include/H5Location.h +include/H5Lpublic.h include/H5MMpublic.h include/H5Object.h include/H5Opublic.h +include/H5PLextern.h +include/H5PTpublic.h +include/H5PacketTable.h include/H5Ppublic.h include/H5PredType.h include/H5PropList.h include/H5Rpublic.h include/H5Spublic.h include/H5StrType.h -include/H5TA.h +include/H5TBpublic.h include/H5Tpublic.h include/H5VarLenType.h include/H5Zpublic.h include/H5api_adpt.h -include/H5cxx_pubconf.h +%%FORTRAN%%include/H5f90i.h +%%FORTRAN%%include/H5f90i_gen.h +include/H5overflow.h include/H5pubconf.h -%%FORTRAN%%include/H5pubconf_fortran.h include/H5public.h +include/H5version.h +%%FORTRAN%%include/h5_dble_interface.mod +%%FORTRAN%%include/h5a.mod +%%FORTRAN%%include/h5a_provisional.mod +%%FORTRAN%%include/h5d.mod +%%FORTRAN%%include/h5d_provisional.mod +%%FORTRAN%%include/h5ds.mod +%%FORTRAN%%include/h5e.mod +%%FORTRAN%%include/h5e_provisional.mod +%%FORTRAN%%include/h5f.mod +%%FORTRAN%%include/h5f_provisional.mod +%%FORTRAN%%include/h5fortran_types.mod +%%FORTRAN%%include/h5g.mod +%%FORTRAN%%include/h5global.mod +%%FORTRAN%%include/h5i.mod +%%FORTRAN%%include/h5im.mod +%%FORTRAN%%include/h5l.mod +%%FORTRAN%%include/h5l_provisional.mod +%%FORTRAN%%include/h5lib.mod +%%FORTRAN%%include/h5lib_provisional.mod +%%FORTRAN%%include/h5lt.mod +%%FORTRAN%%include/h5o.mod +%%FORTRAN%%include/h5o_provisional.mod +%%FORTRAN%%include/h5p.mod +%%FORTRAN%%include/h5p_provisional.mod +%%FORTRAN%%include/h5r.mod +%%FORTRAN%%include/h5r_provisional.mod +%%FORTRAN%%include/h5s.mod +%%FORTRAN%%include/h5t.mod +%%FORTRAN%%include/h5t_provisional.mod +%%FORTRAN%%include/h5tb.mod +%%FORTRAN%%include/h5z.mod include/hdf5.h -%%FORTRAN%%lib/h5a.mod -%%FORTRAN%%lib/h5d.mod -%%FORTRAN%%lib/h5e.mod -%%FORTRAN%%lib/h5f.mod -%%FORTRAN%%lib/h5fortran_flags.mod -%%FORTRAN%%lib/h5fortran_types.mod -%%FORTRAN%%lib/h5g.mod -%%FORTRAN%%lib/h5global.mod -%%FORTRAN%%lib/h5i.mod -%%FORTRAN%%lib/h5lib.mod -%%FORTRAN%%lib/h5p.mod -%%FORTRAN%%lib/h5r.mod -%%FORTRAN%%lib/h5s.mod -%%FORTRAN%%lib/h5t.mod -%%FORTRAN%%lib/h5z.mod -%%FORTRAN%%lib/hdf5.mod +%%FORTRAN%%include/hdf5.mod +include/hdf5_hl.h lib/libhdf5.a -lib/libhdf5.la lib/libhdf5.settings lib/libhdf5.so -lib/libhdf5.so.0 +lib/libhdf5.so.8 +lib/libhdf5.so.8.0.1 lib/libhdf5_cpp.a -lib/libhdf5_cpp.la +lib/libhdf5_cpp.so +lib/libhdf5_cpp.so.8 +lib/libhdf5_cpp.so.8.0.1 %%FORTRAN%%lib/libhdf5_fortran.a -%%FORTRAN%%lib/libhdf5_fortran.la -%%FORTRAN%%lib/libhdf5_fortran.settings +%%FORTRAN%%lib/libhdf5_fortran.so +%%FORTRAN%%lib/libhdf5_fortran.so.8 +%%FORTRAN%%lib/libhdf5_fortran.so.8.0.1 lib/libhdf5_hl.a -lib/libhdf5_hl.la lib/libhdf5_hl.so -lib/libhdf5_hl.so.0 -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/strtype.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite3.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_01.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_02.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_03.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_04.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_05.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_06.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_07.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_08.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_09.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_10.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_11.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_12.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_attribute.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_chunk_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_compound.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_drivers.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend_write.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_group.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_mount.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_reference.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_select.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_write.c -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/attrexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/dsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/fileexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/groupexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpit.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpsexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/hyperslab.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/mountexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refobjexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refregexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/rwdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/selectele.f90 -%%FORTRAN%%%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/fortran -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% +lib/libhdf5_hl.so.8 +lib/libhdf5_hl.so.8.0.1 +lib/libhdf5_hl_cpp.a +lib/libhdf5_hl_cpp.so +lib/libhdf5_hl_cpp.so.8 +lib/libhdf5_hl_cpp.so.8.0.1 +%%FORTRAN%%lib/libhdf5hl_fortran.a +%%FORTRAN%%lib/libhdf5hl_fortran.so +%%FORTRAN%%lib/libhdf5hl_fortran.so.8 +%%FORTRAN%%lib/libhdf5hl_fortran.so.8.0.1 diff --git a/science/meep/Makefile b/science/meep/Makefile index 1c1081f848db..0557de3bfd2c 100644 --- a/science/meep/Makefile +++ b/science/meep/Makefile @@ -3,7 +3,7 @@ PORTNAME= meep PORTVERSION= 1.2 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/meep/ @@ -16,7 +16,7 @@ BUILD_DEPENDS+= bash:${PORTSDIR}/shells/bash \ LIB_DEPENDS+= libguile.so:${PORTSDIR}/lang/guile \ libblas.so:${PORTSDIR}/math/blas \ libctl.so:${PORTSDIR}/science/libctl \ - libhdf5.so:${PORTSDIR}/science/hdf5-18 + libhdf5.so:${PORTSDIR}/science/hdf5 RUN_DEPENDS+= harminv:${PORTSDIR}/science/harminv GNU_CONFIGURE= yes diff --git a/science/minc2/Makefile b/science/minc2/Makefile index c09439252284..7963920933db 100644 --- a/science/minc2/Makefile +++ b/science/minc2/Makefile @@ -12,6 +12,7 @@ PORTNAME= minc PORTVERSION= 2.0.18 +PORTREVISION= 1 PORTEPOCH= 1 CATEGORIES= science biology MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ \ @@ -24,7 +25,7 @@ COMMENT= Medical Imaging NetCDF LICENSE= BSD LIB_DEPENDS= libnetcdf.so.4:${PORTSDIR}/science/netcdf \ - libhdf5.so.0:${PORTSDIR}/science/hdf5 + libhdf5.so:${PORTSDIR}/science/hdf5 USE_AUTOTOOLS= libtool USE_LDCONFIG= yes diff --git a/science/mpb/Makefile b/science/mpb/Makefile index 84f85b85cf5b..c7df390c07e9 100644 --- a/science/mpb/Makefile +++ b/science/mpb/Makefile @@ -3,7 +3,7 @@ PORTNAME= mpb PORTVERSION= 1.4.2 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= science MASTER_SITES= http://ab-initio.mit.edu/mpb/ diff --git a/science/paraview/Makefile b/science/paraview/Makefile index 832343b19ab0..b9d07f4076ef 100644 --- a/science/paraview/Makefile +++ b/science/paraview/Makefile @@ -3,7 +3,7 @@ PORTNAME= paraview PORTVERSION= 4.1.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science graphics MASTER_SITES= http://www.paraview.org/files/v${VERMAJORMINOR}/ DISTNAME= ParaView-v${PORTVERSION}-source @@ -17,7 +17,7 @@ LICENSE_FILE= ${PATCH_WRKSRC}/License_v1.2.txt LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/matplotlib/pyplot.py:${PORTSDIR}/math/py-matplotlib -LIB_DEPENDS= libhdf5.so.7:${PORTSDIR}/science/hdf5-18 \ +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ libpng.so:${PORTSDIR}/graphics/png \ libjpeg.so:${PORTSDIR}/graphics/jpeg \ libtiff.so:${PORTSDIR}/graphics/tiff \ diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile index cc1135cabfd6..1efd80f4e308 100644 --- a/science/py-h5py/Makefile +++ b/science/py-h5py/Makefile @@ -3,7 +3,7 @@ PORTNAME= h5py PORTVERSION= 2.2.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= ${MASTER_SITE_GOOGLE_CODE} PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -15,7 +15,7 @@ LICENSE= BSD BUILD_DEPENDS= ${PYNUMPY} RUN_DEPENDS= ${PYNUMPY} -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5-18 +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 USE_PYTHON= yes USE_PYDISTUTILS= yes diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile index 6f7ec51944c1..97fa148fba0b 100644 --- a/science/py-netCDF4/Makefile +++ b/science/py-netCDF4/Makefile @@ -3,7 +3,7 @@ PORTNAME= netCDF4 PORTVERSION= 1.0.5 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= GOOGLE_CODE PROJECTHOST= netcdf4-python @@ -15,7 +15,7 @@ COMMENT= Python Interface to the NetCDF Library (versions 3 and 4) LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} -LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5-18 \ +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ libnetcdf.so:${PORTSDIR}/science/netcdf4 RUN_DEPENDS= ${PYNUMPY} diff --git a/science/silo/Makefile b/science/silo/Makefile index 7c62ef27aa44..4b715314643b 100644 --- a/science/silo/Makefile +++ b/science/silo/Makefile @@ -4,6 +4,7 @@ PORTNAME= silo PORTVERSION= 4.9.1 DISTVERSIONSUFFIX= -bsd +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= https://wci.llnl.gov/codes/${PORTNAME}/silo-${PORTVERSION}/ diff --git a/sysutils/slurm-hpc/Makefile b/sysutils/slurm-hpc/Makefile index a3e558fbb5e6..0de207034a40 100644 --- a/sysutils/slurm-hpc/Makefile +++ b/sysutils/slurm-hpc/Makefile @@ -3,6 +3,7 @@ PORTNAME= slurm PORTVERSION= 2.6.4 +PORTREVISION= 1 CATEGORIES= sysutils MASTER_SITES= http://www.schedmd.com/download/archive/ \ http://www.schedmd.com/download/latest/ \ @@ -17,11 +18,8 @@ LICENSE= GPLv1 LIB_DEPENDS= libsysinfo.so:${PORTSDIR}/devel/libsysinfo \ libhwloc.so:${PORTSDIR}/devel/hwloc \ libmunge.so:${PORTSDIR}/security/munge \ - librrd.so:${PORTSDIR}/databases/rrdtool -# Testing for hdf5.so is insufficient. It will accept hdf5 1.6 and -# slurm requires hdf5 1.8. h5copy is present only in 1.8. -BUILD_DEPENDS+= ${LOCALBASE}/bin/h5copy:${PORTSDIR}/science/hdf5-18 -RUN_DEPENDS+= ${BUILD_DEPENDS} + librrd.so:${PORTSDIR}/databases/rrdtool \ + libhdf5.so:${PORTSDIR}/science/hdf5 USE_BZIP2= yes USE_LDCONFIG= yes |