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# New ports collection makefile for: phred
# Date created: 6 December 2007
# Whom: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
#
# $FreeBSD$
#
PORTNAME= phred
PORTVERSION= 0.020425.c
CATEGORIES= biology
MASTER_SITES= # put the tarball manually
DISTNAME= ${PORTNAME}-dist-${PORTVERSION:S/0.//}-acd
EXTRACT_SUFX= .tar.Z
MAINTAINER= mzaki@biol.s.u-tokyo.ac.jp
COMMENT= Base calling and quality value assignment on DNA sequencing
RESTRICTED= Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
.if defined(PACKAGE_BUILDING)
IGNORE= distribution files must be obtained via the authors
.endif
NO_WRKSUBDIR= yes
ALL_TARGET= phred daev
BINMODE= 0111 # avoid copying binaries as required by the agreement
BINARIES= phred daev
.for f in ${BINARIES}
PLIST_FILES+= bin/${f}
.endfor
DATADIR= ${PREFIX}/etc/PhredPar
DATAFILES= phredpar.dat
.for f in ${DATAFILES}
PORTDATA+= ${f}.dist
.endfor
PORTDOCS= NEWS PHRED.DOC DAEV.DOC
.include <bsd.port.pre.mk>
.for f in ${DISTFILES}
.if !exists(${DISTDIR}/${f})
IGNORE= you must request the source code \(${f}\) via e-mail, place it manually in ${DISTDIR}, and then try it again
.endif
.endfor
do-install:
.for f in ${BINARIES}
@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/
.endfor
@${MKDIR} ${DATADIR}
.for f in ${DATAFILES}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}/${f}.dist
.endfor
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR}
.endfor
.endif
@${ECHO} "---------------------------------------------------------------------------"
@${ECHO} "You must set PHRED_PARAMETER_FILE environment variable."
@${ECHO} ""
@${ECHO} "The default parameter file in the distribution is located at:"
@${ECHO} " ${DATADIR}/phredpar.dat.dist"
@${ECHO} "---------------------------------------------------------------------------"
.include <bsd.port.post.mk>
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