bin/blast_formatter
bin/blast_report
bin/blastdb_aliastool
bin/blastdb_convert
bin/blastdb_path
bin/blastdbcheck
bin/blastdbcmd
bin/blastdbcp
bin/blastn
bin/blastp
bin/blastx
bin/cleanup-blastdb-volumes.py
bin/convert2blastmask
bin/datatool
bin/deltablast
bin/dustmasker
bin/gc_cli
bin/gene_info_reader
bin/get_species_taxids.sh
bin/legacy_blast.pl
bin/lmdbxx_sample
bin/makeblastdb
bin/makembindex
bin/makeprofiledb
bin/project_tree_builder
bin/psiblast
bin/rpsblast
bin/rpstblastn
bin/run_with_lock
bin/seedtop
bin/segmasker
bin/seqdb_demo
bin/seqdb_perf
bin/tblastn
bin/tblastx
bin/update_blastdb.pl
bin/windowmasker
bin/windowmasker_2.2.22_adapter.py
include/ncbi-tools++/algo/blast/api/bl2seq.hpp
include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
include/ncbi-tools++/algo/blast/api/blast_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
include/ncbi-tools++/algo/blast/api/blast_exception.hpp
include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
include/ncbi-tools++/algo/blast/api/blast_node.hpp
include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/blast_options.hpp
include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/blast_results.hpp
include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
include/ncbi-tools++/algo/blast/api/blast_types.hpp
include/ncbi-tools++/algo/blast/api/blast_usage_report.hpp
include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp
include/ncbi-tools++/algo/blast/api/blastx_options.hpp
include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/deltablast.hpp
include/ncbi-tools++/algo/blast/api/deltablast_options.hpp
include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
include/ncbi-tools++/algo/blast/api/local_blast.hpp
include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
include/ncbi-tools++/algo/blast/api/local_search.hpp
include/ncbi-tools++/algo/blast/api/magicblast.hpp
include/ncbi-tools++/algo/blast/api/magicblast_options.hpp
include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
include/ncbi-tools++/algo/blast/api/prelim_stage.hpp
include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
include/ncbi-tools++/algo/blast/api/psibl2seq.hpp
include/ncbi-tools++/algo/blast/api/psiblast.hpp
include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
include/ncbi-tools++/algo/blast/api/pssm_engine.hpp
include/ncbi-tools++/algo/blast/api/pssm_input.hpp
include/ncbi-tools++/algo/blast/api/query_data.hpp
include/ncbi-tools++/algo/blast/api/remote_blast.hpp
include/ncbi-tools++/algo/blast/api/remote_search.hpp
include/ncbi-tools++/algo/blast/api/repeats_filter.hpp
include/ncbi-tools++/algo/blast/api/rps_aux.hpp
include/ncbi-tools++/algo/blast/api/rpsblast_local.hpp
include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
include/ncbi-tools++/algo/blast/api/search_strategy.hpp
include/ncbi-tools++/algo/blast/api/seedtop.hpp
include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
include/ncbi-tools++/algo/blast/api/setup_factory.hpp
include/ncbi-tools++/algo/blast/api/sseqloc.hpp
include/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp
include/ncbi-tools++/algo/blast/api/tblastn_options.hpp
include/ncbi-tools++/algo/blast/api/tblastx_options.hpp
include/ncbi-tools++/algo/blast/api/traceback_stage.hpp
include/ncbi-tools++/algo/blast/api/uniform_search.hpp
include/ncbi-tools++/algo/blast/api/version.hpp
include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_asn1_input.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
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include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
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include/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp
include/ncbi-tools++/algo/blast/blastinput/kblastp_args.hpp
include/ncbi-tools++/algo/blast/blastinput/magicblast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp
include/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp
include/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp
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include/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h
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include/ncbi-tools++/algo/blast/core/hspfilter_mapper.h
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include/ncbi-tools++/algo/blast/core/split_query.h
include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
include/ncbi-tools++/algo/blast/format/blast_async_format.hpp
include/ncbi-tools++/algo/blast/format/blast_format.hpp
include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp
include/ncbi-tools++/algo/blast/format/blastxml_format.hpp
include/ncbi-tools++/algo/blast/format/build_archive.hpp
include/ncbi-tools++/algo/blast/format/data4xml2format.hpp
include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp
include/ncbi-tools++/algo/blast/format/sam.hpp
include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp
include/ncbi-tools++/algo/blast/igblast/igblast.hpp
include/ncbi-tools++/algo/blast/proteinkmer/blastkmer.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmeroptions.hpp
include/ncbi-tools++/algo/blast/proteinkmer/blastkmerresults.hpp
include/ncbi-tools++/algo/blast/proteinkmer/blastkmerutils.hpp
include/ncbi-tools++/algo/blast/proteinkmer/kblastapi.hpp
include/ncbi-tools++/algo/blast/proteinkmer/mhfile.hpp
include/ncbi-tools++/algo/dustmask/sdust.tex
include/ncbi-tools++/algo/dustmask/symdust.hpp
include/ncbi-tools++/algo/segmask/segmask.hpp
include/ncbi-tools++/algo/winmask/README.API
include/ncbi-tools++/algo/winmask/seq_masker.hpp
include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
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include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
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include/ncbi-tools++/cgi/caf.hpp
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include/ncbi-tools++/cgi/ncbicgir.hpp
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