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* Add gff2ps 0.97b, converts gff-formated genomic data-sets toPete Fritchman2001-12-196-0/+42
| | | | | | | PostScript. PR: 32920 Submitted by: Camson Huynh <chuynh@biolateral.com.au>
* Add dna-qc 1993.07.26, a quality control algorithm for DNAPete Fritchman2001-12-197-0/+94
| | | | | | | sequencing projects. PR: 32998 Submitted by: Tony Maher <tonym@biolateral.com.au>
* Update to version 2001.10.12.Steve Price2001-12-162-2/+2
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* fix pkg-plistYing-Chieh Liao2001-12-081-0/+1
| | | | | PR: 32609 Submitted by: Ports Fury
* * Replace pkg-message about setting BABEL_DIR with a wrapper scriptChristian Weisgerber2001-12-028-26/+55
| | | | | | | | that does. * Remove misleading full path name from usage message. * Improve fgets() usage. * Add converters category. * Improve pkg-comment and pkg-descr.
* - update to 1.3.2Pete Fritchman2001-11-282-7/+4
| | | | | | | - use DOCSDIR PR: 32305 Submitted by: KATO Tsuguru <tkato@prontomail.com>
* Update to 0.3.2.Akinori MUSHA2001-11-283-4/+21
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* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ↵Mario Sergio Fujikawa Ferreira2001-11-201-1/+1
| | | | the later case
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ↵Mario Sergio Fujikawa Ferreira2001-11-202-2/+2
| | | | the later case
* chase checksum for repacked distfile almost an year ago.FUJISHIMA Satsuki2001-11-063-2/+3
| | | | | | | | | Maintainer does not have previous distfile. As the distfile for this port is not distributable, it is OK to me to change distinfo now. PR: 31010 Submitted by: maintainer
* Add ruby-bio (BioRuby), an integrated environment for BioinformaticsAkinori MUSHA2001-10-246-0/+91
| | | | written in Ruby.
* update WWW and master siteYing-Chieh Liao2001-10-222-2/+10
| | | | | PR: 31011 Submitted by: maintainer
* Remove a redundant trailing space.Akinori MUSHA2001-10-211-1/+1
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* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0Johann Visagie2001-10-025-263/+210
| | | | | | - If CORBA support is included, the default ORB has changed from omniORB to ORBit - PORTREVISION bump
* Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie2001-09-268-0/+105
| | | | | PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au>
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(Johann Visagie2001-09-201-0/+1
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* - Add installation of include filesJohann Visagie2001-09-194-134/+445
| | | | | | | - Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER)
* style fix: un"echo" commandsMario Sergio Fujikawa Ferreira2001-09-131-40/+40
| | | | Approved by: MAINTAINER
* Update to 3.9Mario Sergio Fujikawa Ferreira2001-09-1312-116/+161
| | | | | PR: 30398 Submitted by: MAINTAINER
* Bump png majorAndrey A. Chernov2001-09-111-1/+1
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* Fix a buglet with the use of XFREE86_VERSION without includingAnton Berezin2001-09-061-1/+3
| | | | | | bsd.port.pre.mk first. Spotted by: Dan Langille <dan@langille.org>
* Make biology/rasmol work at all color depths.Anton Berezin2001-09-064-8/+91
| | | | | PR: 30406 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* - Update to version 1.00.a3Johann Visagie2001-09-064-105/+167
| | | | - Use pkg-req to check the installed version of Python
* - Update to version 3.1Johann Visagie2001-08-294-6/+18
| | | | | PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
* - Update to version 1.0.3Johann Visagie2001-08-292-3/+3
| | | | | PR: 30175 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
* - Update to version 1.2.4Johann Visagie2001-08-222-2/+2
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* - Update port to version 2.2gJohann Visagie2001-08-224-223/+34
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* Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie2001-08-2210-0/+400
| | | | | | | biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au>
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie2001-08-225-43/+30
| | | | | | | | | renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER
* - Move the (very) long list of manpages from the port Makefile to a separateJohann Visagie2001-08-202-123/+240
| | | | | | file. Inspired by: nectar's treatment of security/heimdal
* Update to 0.95.Trevor Johnson2001-08-204-27/+30
| | | | | | | Compile molecule_tools.cpp with -O0 on all architectures, not just the Alpha, to avoid g++ pessimization. Submitted by: Matthew Emmerton <matt@gsicomp.on.ca>
* Remove a patch turd from the pkg-plistKris Kennaway2001-08-201-1/+0
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* Add treeviewx 0.1.1, a phylogenetic tree viewer.Johann Visagie2001-08-179-0/+82
| | | | | PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au>
* Add p5-bioperl-devel 0.9.0,Johann Visagie2001-08-148-0/+566
| | | | | a collection of Perl modules for bioinformatics (developer's release).
* Update to version 1.75Johann Visagie2001-08-134-14/+27
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* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.Johann Visagie2001-08-133-40/+46
| | | | | | | - Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist. (Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. - Update my email address and the project's URL in pkg-descr.
* upgrade to 0.26Ying-Chieh Liao2001-08-095-32/+30
| | | | drop maintainership
* Add lamarc 2001.08.06,Johann Visagie2001-08-075-0/+42
| | | | | a package of programs for computing population parameters.
* Add recombine 1.40, a program to fit population models across sites.Johann Visagie2001-08-067-0/+166
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* Add fluctuate 1.30, a program to fit population models.Johann Visagie2001-08-067-0/+89
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* Add coalesce 1.50, a program to fit population models.Johann Visagie2001-08-067-0/+73
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* Correct my email address.Johann Visagie2001-08-061-1/+1
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* Add migrate 1.2,Johann Visagie2001-08-066-0/+63
| | | | | a program to estimate population sizes and migration rates.
* Update maintainer's email address.Johann Visagie2001-08-061-1/+1
| | | | Approved by: MAINTAINER
* - Update port to version 2.0.1Johann Visagie2001-08-035-24/+110
| | | | - Add two new EMBASSY applications, MEME and HMMER.
* add USE_XLIBMario Sergio Fujikawa Ferreira2001-07-301-0/+2
| | | | | PR: 29330 Submitted by: bento, Patrick Li <pat@databits.net>
* This port require bison to build so add USE_BISON.Steve Price2001-07-251-0/+1
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* Remove obsolete pointer to online documentation.Johann Visagie2001-07-111-4/+2
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* Update package's URL; my email address.Johann Visagie2001-07-112-3/+3
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* Update Tony Maher's email address.Bill Fenner2001-07-101-1/+1
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