summaryrefslogtreecommitdiff
path: root/biology/Makefile (unfollow)
Commit message (Expand)AuthorFilesLines
2017-05-06bx-python is a python library and associated set of scripts to allow for rapidMartin Wilke1-0/+1
2017-05-06pysam is a lightweight wrapper of the htslib C-API and provides facilities toMartin Wilke1-0/+1
2017-04-302017-04-30 devel/stormlib-ghost++: Unfetchable for more than six months (goog...Larry Rosenman1-1/+0
2017-02-05Move devel/rubygem-bio to biology/rubygem-bioSunpoet Po-Chuan Hsieh1-0/+1
2016-12-19- Add p5-Bio-Coordinate 1.007001Sunpoet Po-Chuan Hsieh1-0/+1
2016-12-18- Move biology/p5-bioperl-run to biology/p5-BioPerl-RunSunpoet Po-Chuan Hsieh1-1/+1
2016-12-18- Move biology/p5-bioperl to biology/p5-BioPerlSunpoet Po-Chuan Hsieh1-1/+1
2016-11-16biology/njplot: Revive and update to version 2.4Joseph Mingrone1-0/+1
2016-07-04Remove expired ports without open PRs:Rene Ladan1-1/+0
2016-05-10biology/seqan: update 1.3.1 -> 2.1.1Jason Unovitch1-0/+1
2016-05-10New port: biology/seqan-appsJason Unovitch1-0/+1
2016-05-09The BIOM file format (canonically pronounced biome) is designed to be aOlivier Duchateau1-0/+1
2016-05-06DNA query sequences against a protein reference database (BLASTP and BLASTXWen Heping1-0/+1
2016-03-24Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.Dmitry Marakasov1-0/+1
2016-03-23New port: biology/bowtie2.Raphael Kubo da Costa1-0/+1
2016-03-23New port: biology/slclust.Raphael Kubo da Costa1-0/+1
2016-03-17Trimmomatic performs a variety of useful trimming tasks for illuminaWen Heping1-0/+1
2016-03-16New port: biology/p5-transdecoderKurt Jaeger1-0/+1
2016-03-05New port: biology/bowtie.Raphael Kubo da Costa1-0/+1
2016-02-26New port: biology/vcftools.Raphael Kubo da Costa1-0/+1
2016-01-19The bedtools utilities are a suite of tools for performing a wide range ofWen Heping1-0/+1
2015-11-28Remove expired ports:Rene Ladan1-3/+0
2015-09-25BWA is a program for aligning sequencing reads against a large referenceRuslan Makhmatkhanov1-0/+1
2015-09-25Fast indexing and retrieval of FASTA records from flat file data bases.Ruslan Makhmatkhanov1-0/+1
2015-09-25Simple and quick FastQ and FastA tool for file reading and conversion.Ruslan Makhmatkhanov1-0/+1
2015-09-25FastTree infers approximately-maximum-likelihood phylogenetic trees fromRuslan Makhmatkhanov1-0/+1
2015-09-25The FASTX-Toolkit is a collection of command line tools for Short-ReadsRuslan Makhmatkhanov1-0/+1
2015-09-25Gordon's text utilities.Ruslan Makhmatkhanov1-0/+1
2015-09-19CD-HIT is a very widely used program for clustering and comparing protein orWen Heping1-0/+1
2015-06-05New port: biology/bcftoolsKurt Jaeger1-0/+1
2015-01-01Remove expired ports:Rene Ladan1-1/+0
2014-12-30Rename biology/ncbi-blast to biology/ncbi-blast+Michael Gmelin1-1/+1
2014-12-15Samtools implements various utilities for post-processing alignments in thePawel Pekala1-0/+1
2014-12-14HTSlib is an implementation of a unified C library for accessing common filePawel Pekala1-0/+1
2014-10-06Add new port biology/ncbi-blastJohn Marino1-0/+1
2014-09-02Second run at cleaning out non staged ports without pending PRBaptiste Daroussin1-1/+0
2014-09-01Remove non staged ports without pending PR from b*Baptiste Daroussin1-3/+0
2014-04-18Remove expired ports:Rene Ladan1-2/+0
2014-04-13Remove expired ports:Rene Ladan1-2/+0
2013-11-10biology/seqtools: Tools for visualising sequence alignmentsWilliam Grzybowski1-1/+1
2013-08-29- Disconnect ports removed in r325546Bryan Drewery1-1/+0
2013-07-26KDE3 and QT3 expired on 2013-07-01, remove these ports.Rene Ladan1-1/+0
2013-02-23Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.Alexey Dokuchaev1-0/+1
2012-11-282012-11-26 benchmarks/gsbench: No more public distfilesBaptiste Daroussin1-1/+0
2012-10-252012-10-20 chinese/wangttf: No more public distfilesBaptiste Daroussin1-1/+0
2012-09-27Add new ports biology/plink [1] and biology/plinkseq [2]:Max Brazhnikov1-0/+2
2012-06-06SeqAn is an open source C++ library of efficient algorithmsDmitry Marakasov1-0/+1
2011-08-01Bye bye abandonwares (part 2)Baptiste Daroussin1-5/+0
2011-04-22Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.Wen Heping1-0/+1
2010-03-01p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XMLWen Heping1-0/+1
generated by cgit v1.2.3 (git 2.25.1) at 2025-01-01 17:33:55 +0000