| Commit message (Collapse) | Author | Age | Files | Lines |
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- FDP-primer 2.1.1 says graphics/peps is mandatory tool
- make lint fails without textproc/opensp
I have compared it with
http://www.freebsd.org/cgi/cvsweb.cgi/~checkout~/src/release/Makefile.inc.docports?rev=1.25;content-type=text%2Fplain
as stated in the beginning of the Makefile.
PR: ports/120198
Submitted by: Thomas Abthorpe <tabthorpe@FreeBSD.org>
Approved by: maintainer timeout
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assembly
Consed is a tool for viewing, editing, and finishing sequence
assemblies.
The port is constituted of 4 parts:
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
biology/consed: workbench
biology/phd2fasta: small utility
All these can be used separately; however, most function
of consed depends on the others.
Although these programs are licensed freely for academic
and nonprofit purposes, users have to contact the authors
to get the softwares.
Phred (including phd2fasta) and phrap are emailed,
and consed can be downloaded to a restricted IP address.
For commercial users, the licensing fee is ca. $10,000 at
the time of writing.
PR: ports/118548
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
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assembly
Consed is a tool for viewing, editing, and finishing sequence
assemblies.
The port is constituted of 4 parts:
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
biology/consed: workbench
biology/phd2fasta: small utility
All these can be used separately; however, most function
of consed depends on the others.
Although these programs are licensed freely for academic
and nonprofit purposes, users have to contact the authors
to get the softwares.
Phred (including phd2fasta) and phrap are emailed,
and consed can be downloaded to a restricted IP address.
For commercial users, the licensing fee is ca. $10,000 at
the time of writing.
PR: ports/118548
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
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assembly
Consed is a tool for viewing, editing, and finishing sequence
assemblies.
The port is constituted of 4 parts:
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
biology/consed: workbench
biology/phd2fasta: small utility
All these can be used separately; however, most function
of consed depends on the others.
Although these programs are licensed freely for academic
and nonprofit purposes, users have to contact the authors
to get the softwares.
Phred (including phd2fasta) and phrap are emailed,
and consed can be downloaded to a restricted IP address.
For commercial users, the licensing fee is ca. $10,000 at
the time of writing.
PR: ports/118548
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
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assembly
Consed is a tool for viewing, editing, and finishing sequence assemblies.
The port is constituted of 4 parts:
biology/phred: base caller with quality evaluation
biology/phrap: sequence assembler for shotgun sequencing
biology/consed: workbench
biology/phd2fasta: small utility
All these can be used separately; however, most function
of consed depends on the others.
Although these programs are licensed freely for academic
and nonprofit purposes, users have to contact the authors
to get the softwares.
Phred (including phd2fasta) and phrap are emailed,
and consed can be downloaded to a restricted IP address.
For commercial users, the licensing fee is ca. $10,000 at
the time of writing.
PR: ports/118548
Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
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matching and rewriting
2d-rewriter is fractals generator based on pattern matching
and rewriting. The program takes input containing initial
object placement and rewriting rules and keeps applying
rules to the data field until it reaches an arrangement
where no rules can be applied.
PR: ports/118906
Submitted by: Igor Serikov <bt@turtle.freedns.us>
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asdlGen generates data structure and serializer code from ASDL
specifications [1]. It is especially helpful for exchanging
tree like data structures between different programming languages.
Currently C, C++, Haskell, Java, Icon, OCaml and SML are supported.
Although the asdlGen project itself seems no longer actively
maintained, ASDL is "alive" as it is used (at least) in the
Moby [2] and Python [3,4] compilers.
The port optionally installs a simple usage example [5] for all
seven programming languages. I developed it primarily to test the
port, but it could be helpful to users of asdlGen to get a quicker
start, especially if a less familiar programming language is
involved in their project. Reviewers/committers can easily make
use of it via the "test-demo" target.
PR: ports/117703
Submitted by: Johannes 5 Joemann <joemann@beefree.free.de>
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Patch included to upgrade AFFLIB port from 3.1.3 to 3.2.0.
PR: ports/123757
Submitted by: Chris Calvey <chris@securityforensics.co.uk>
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PR: ports/123898
Submitted by: Fumihiko Kimura <jfkimura@yahoo.co.jp>
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PR: ports/122113
Submitted by: Henry Hu <henry.hu.sh@gmail.com>
Approved by: maintainer timeout
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- Move startup options to rc script
- Bump PORTREVISION
PR: ports/123916 (based on)
Submitted by: Paul Schmehl <pauls at utdallas.edu> (maintainer)
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when PREFIX is set other than LOCALBASE and will allowing the modules to build.
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when PREFIX is set other than LOCALBASE and will allowing the modules to build.
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problem with defaults in bsd.port.mk
Noticed by: linimon@
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- Updated to 2.16.0;
- Makefile cleanup
PR: ports/120590
Submitted by: Felippe de Meirelles Motta <lippemail@gmail.com>
Approved by: maintainer timeout
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net/mDNSResponder and net/avahi-libdns install files in the
same place.
/usr/ports/net/mDNSResponder/Makefile contains CONFLICTS=
avahi+libdns-[0-9]*, but the package name is avahi-libdns-0.6.22.
/usr/ports/net/avahi-libdns/Makefile does not contain any
CONFLICTS section.
PR: ports/121434
Submitted by: Anatoly Borodin <anatoly.borodin@gmail.com>
Approved by: various maintainer timeouts
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According to http://cr.yp.to/distributors.html djbdns is
put into the public domain, therefore the port doesn't need
to be RESTRICTED.
PR: ports/122864
Submitted by: Björn Jonare <rksah@bredband.net>
Approved by: maintainer timeout
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new port of Nether Eearth Re-Make
(http://www.braingames.getput.com/nether/)
Nether Earth was the very first real time strategy game.
It worked on a SPECTRUM machine, and only needed 48KB of
RAM to work!! It has all the tipical elements of strategy
games: resources, factories, combat units, etc. supposed
name of ports: netherearth
NETHER EARTH REMAKE. Nether Earth was the very first real
time strategy game. It worked on a SPECTRUM machine, and
only needed 48KB of RAM to work!!
It has all the tipical elements of strategy games: resources,
factories, combat units, etc.
WWW: http://www.braingames.getput.com/nether/default.asp
- OleVole
olevole@yandex.ru
PR: ports/123800
Submitted by: OleVole <olevole@yandex.ru>
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and asynchronous DNS queries.
WWW: http://www.corpit.ru/mjt/udns.html
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Add HTML documentation OPTION knob.
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Reported by: ionbot
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Approved by: delphij (mentor,implicit)
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PR: ports/123899
Submitted by: Tassilo Philipp <tphilipp potion-studios com>
Approved by: tabthorpe (mentor)
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- Bump PORTREVISION
Submitted by: Herbert J. Skuhra <h.skuhra@gmail.com>
Reported by: itetcu
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Reported by: miwi
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- Reassign to ports@
PR: ports/123900
Submitted by: Tony Maher <tonymaher optusnet.com.au>
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- Bump PORTREVISION
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Approved by: mentor (implicit)
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Approved by: portmgr (self)
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system.
- Bump PORTREVISION
Approved by: Meyer Wolfsheim <wolf at priori.net> (maintainer)
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Approved by: delphij (mentor,implicit)
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