2 files changed, 56 insertions, 0 deletions
diff --git a/science/py-pymol/files/patch-create__shadertext.py b/science/py-pymol/files/patch-create__shadertext.py
new file mode 100644
index 000000000000..20bf5c027e0e
--- /dev/null
+++ b/science/py-pymol/files/patch-create__shadertext.py
@@ -0,0 +1,34 @@
+--- create_shadertext.py.orig	2017-03-09 18:16:07 UTC
++++ create_shadertext.py
+@@ -93,19 +93,20 @@ def create_shadertext(shaderdir, shaderd
+ 
+ def create_buildinfo(outputdir, pymoldir='.'):
+ 
+-    try:
+-        sha = Popen(['git', 'rev-parse', 'HEAD'], cwd=pymoldir,
+-                stdout=PIPE).stdout.read().strip().decode()
+-    except OSError:
+-        sha = ''
++    #try:
++    #    sha = Popen(['git', 'rev-parse', 'HEAD'], cwd=pymoldir,
++    #            stdout=PIPE).stdout.read().strip().decode()
++    #except OSError:
++    #    sha = ''
++    sha = 'n/a'
+ 
+     rev = 0
+-    try:
+-        for line in Popen(['svn', 'info'], cwd=pymoldir, stdout=PIPE).stdout:
+-            if line.startswith(b'Last Changed Rev'):
+-                rev = int(line.split()[3])
+-    except OSError:
+-        pass
++    #try:
++    #    for line in Popen(['svn', 'info'], cwd=pymoldir, stdout=PIPE).stdout:
++    #        if line.startswith(b'Last Changed Rev'):
++    #            rev = int(line.split()[3])
++    #except OSError:
++    #    pass
+ 
+     with openw(os.path.join(outputdir, 'PyMOLBuildInfo.h')) as out:
+         print('''
diff --git a/science/py-pymol/files/patch-setup.py b/science/py-pymol/files/patch-setup.py
new file mode 100644
index 000000000000..9c43d171c4cb
--- /dev/null
+++ b/science/py-pymol/files/patch-setup.py
@@ -0,0 +1,22 @@
+--- setup.py.orig	2017-03-09 18:16:07 UTC
++++ setup.py
+@@ -52,6 +52,8 @@ try:
+             "keyword support.")
+     parser.add_argument('--help-distutils', action="store_true",
+             help="show help for distutils options and exit")
++    parser.add_argument('--single-version-externally-managed', action="store_true",
++            help="single-version-externally-managed")
+     options, sys.argv[1:] = parser.parse_known_args(namespace=options)
+ except ImportError:
+     print("argparse not available")
+@@ -318,8 +320,8 @@ else: # unix style (linux, mac, ...)
+ 
+     # optimization currently causes a clang segfault on OS X 10.9 when
+     # compiling layer2/RepCylBond.cpp
+-    if sys.platform != 'darwin':
+-        ext_comp_args += ["-O3"]
++    #if sys.platform != 'darwin':
++    #    ext_comp_args += ["-O3"]
+ 
+ def get_pymol_version():
+     return re.findall(r'_PyMOL_VERSION "(.*)"', open('layer0/Version.h').read())[0]