9 files changed, 0 insertions, 131 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 3d5b20844e1b..684835a5389f 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -19,7 +19,6 @@
     SUBDIR += cd-hit
     SUBDIR += cdbfasta
     SUBDIR += checkm
-    SUBDIR += chemeq
     SUBDIR += clustal-omega
     SUBDIR += clustalw
     SUBDIR += consed
@@ -69,7 +68,6 @@
     SUBDIR += libbigwig
     SUBDIR += libgtextutils
     SUBDIR += libsbml
-    SUBDIR += linux-foldingathome
     SUBDIR += mafft
     SUBDIR += mapm3
     SUBDIR += migrate
diff --git a/biology/chemeq/Makefile b/biology/chemeq/Makefile
deleted file mode 100644
index 09cd7a92e693..000000000000
--- a/biology/chemeq/Makefile
+++ /dev/null
@@ -1,45 +0,0 @@
-# Created by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
-# $FreeBSD$
-
-PORTNAME=	chemeq
-PORTVERSION=	1.50
-PORTREVISION=	2
-CATEGORIES=	biology textproc
-MASTER_SITES=	http://download.gna.org/chemeq/chemeq-1.5/ \
-		http://freebsd.nsu.ru/distfiles/
-DISTNAME=	${PORTNAME}_1.5
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Outputs LaTeX code for chemical reaction
-
-LICENSE=	GPLv2
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BROKEN=		unfetchable
-DEPRECATED=	Unfetchable, unmaintained
-EXPIRATION_DATE=	2019-10-16
-
-MAKE_ARGS=	CXX="${CXX}" CXXFLAGS="${CXXFLAGS}"
-WRKSRC=		${WRKDIR}/${PORTNAME}-1.5
-
-USES=		bison
-
-PLIST_FILES=	bin/chemeq man/man1/chemeq.1.gz
-PORTDOCS=	README
-PORTEXAMPLES=	chemreport chemreport.pl chemtest chemtest.pl test.stuff
-
-OPTIONS_DEFINE=	DOCS EXAMPLES
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/src/chemeq ${STAGEDIR}${PREFIX}/bin
-	${INSTALL_MAN} ${WRKSRC}/chemeq.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
-
-do-install-DOCS-on:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR}
-
-do-install-EXAMPLES-on:
-	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
-	${INSTALL_DATA} ${PORTEXAMPLES:S,^,${WRKSRC}/tests/,} ${STAGEDIR}${EXAMPLESDIR}
-
-.include <bsd.port.mk>
diff --git a/biology/chemeq/distinfo b/biology/chemeq/distinfo
deleted file mode 100644
index 1b41692ef22d..000000000000
--- a/biology/chemeq/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (chemeq_1.5.tar.gz) = f08ff4c07da773fdd5b3adc9a5323868d59f66aed931aff390c5ee92058b3d25
-SIZE (chemeq_1.5.tar.gz) = 28202
diff --git a/biology/chemeq/files/patch-src_chemeq.h b/biology/chemeq/files/patch-src_chemeq.h
deleted file mode 100644
index eb58547cd4f4..000000000000
--- a/biology/chemeq/files/patch-src_chemeq.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/chemeq.h.orig	2003-03-11 22:36:25 UTC
-+++ src/chemeq.h
-@@ -6,6 +6,8 @@
- #include <iostream>
- #include <vector>
- #include <string>
-+#include <cstdlib>
-+#include <cstring>
- #include <map>
- 
- typedef struct {
diff --git a/biology/chemeq/pkg-descr b/biology/chemeq/pkg-descr
deleted file mode 100644
index a88a175fce1f..000000000000
--- a/biology/chemeq/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-Chemeq is a basic standalone filter written in C++ language, flex and bison.
-It takes strings like: 2H2 + O2 ---> 2 H2O and can output pretty LaTeX code,
-useful messages and much more.  It aims to be embeddable in education tools.
diff --git a/biology/linux-foldingathome/Makefile b/biology/linux-foldingathome/Makefile
deleted file mode 100644
index fc5dbe0e0e7a..000000000000
--- a/biology/linux-foldingathome/Makefile
+++ /dev/null
@@ -1,42 +0,0 @@
-# Created by: Yonatan <onatan@gmail.com>
-# $FreeBSD$
-
-PORTNAME=	foldingathome
-PORTVERSION=	5.04
-CATEGORIES=	biology
-MASTER_SITES=	http://www.stanford.edu/group/pandegroup/release/
-PKGNAMEPREFIX=	linux-
-DISTNAME=	FAH${PORTVERSION:S/.//}-Linux
-EXTRACT_SUFX=	.exe
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Distributed client for Protein Folding
-
-BROKEN=		unfetchable
-DEPRECATED=	Unfetchable, unmaintained
-EXPIRATION_DATE=	2019-10-16
-
-USES=		linux
-ONLY_FOR_ARCHS=	i386 amd64
-REINPLACE_ARGS=
-PLIST_FILES=	share/${PORTNAME}/${DISTNAME}${EXTRACT_SUFX} \
-		bin/FoldingAtHome
-
-do-extract:
-	${MKDIR} ${WRKSRC}
-	${CP} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} ${WRKSRC}
-
-do-build:
-	${BRANDELF} -t Linux ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX}
-	${CHMOD} 755 ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX}
-
-do-install:
-	${MKDIR} ${STAGEDIR}${PREFIX}/bin
-	${REINPLACE_CMD} -e "s|DATADIR|${DATADIR}|" ${SCRIPTDIR}/FoldingAtHome \
-		| ${REINPLACE_CMD} -e "s|BINNAME|${DISTNAME}${EXTRACT_SUFX}|" \
-		> ${STAGEDIR}${PREFIX}/bin/FoldingAtHome
-	${CHMOD} 755 ${STAGEDIR}${PREFIX}/bin/FoldingAtHome
-	${MKDIR} ${STAGEDIR}${DATADIR}
-	${CP} ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX} ${STAGEDIR}${DATADIR}/
-
-.include <bsd.port.mk>
diff --git a/biology/linux-foldingathome/distinfo b/biology/linux-foldingathome/distinfo
deleted file mode 100644
index 65e45db5641a..000000000000
--- a/biology/linux-foldingathome/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (FAH504-Linux.exe) = c491b23af1edee41db474545c0a084f3f4cf4ccf50bceb56da499df63eb38464
-SIZE (FAH504-Linux.exe) = 250964
diff --git a/biology/linux-foldingathome/pkg-descr b/biology/linux-foldingathome/pkg-descr
deleted file mode 100644
index ab1b775dd16a..000000000000
--- a/biology/linux-foldingathome/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-Folding@home is a distributed computing project -- people from throughout
-the world download and run software to band together to make one of the
-largest supercomputers in the world.  Every computer takes the project
-closer to our goals.
-
-Folding@home uses novel computational methods coupled to distributed
-computing, to simulate problems millions of times more challenging than
-previously achieved.
-
-Protein folding is linked to disease, such as Alzheimer's, ALS,
-Huntington's, Parkinson's disease, and many Cancers.  Moreover, when
-proteins do not fold correctly (i.e. "misfold"), there can be serious
-consequences, including many well known diseases, such as Alzheimer's,
-Mad Cow (BSE), CJD, ALS, Huntington's, Parkinson's disease, and many
-cancers and cancer-related syndromes.
-
-WWW: http://folding.stanford.edu/
diff --git a/biology/linux-foldingathome/scripts/FoldingAtHome b/biology/linux-foldingathome/scripts/FoldingAtHome
deleted file mode 100644
index c2c2a72dc805..000000000000
--- a/biology/linux-foldingathome/scripts/FoldingAtHome
+++ /dev/null
@@ -1,7 +0,0 @@
-#!/bin/sh
-FAHDIR=~/.fah
-CURDIR=`pwd`
-mkdir $FAHDIR
-cd $FAHDIR
-nice -n 20 /DATADIR/BINNAME -freeBSD
-cd $CURDIR