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-rw-r--r--biology/biococoa/Makefile2
-rw-r--r--biology/boinc-simap/Makefile2
-rw-r--r--biology/crux/Makefile2
-rw-r--r--biology/molden/Makefile2
-rw-r--r--biology/ortep3/Makefile2
-rw-r--r--biology/platon/Makefile1
-rw-r--r--biology/plink/Makefile2
-rw-r--r--biology/protomol/Makefile2
-rw-r--r--biology/psi88/Makefile2
-rw-r--r--biology/py-biopython/Makefile2
-rw-r--r--biology/pycogent/Makefile2
-rw-r--r--biology/pyfasta/Makefile1
-rw-r--r--biology/seaview/Makefile1
-rw-r--r--biology/seqan/Makefile2
-rw-r--r--biology/t_coffee/Makefile2
-rw-r--r--biology/tinker/Makefile2
-rw-r--r--biology/treeviewx/Makefile1
-rw-r--r--biology/ugene/Makefile1
18 files changed, 18 insertions, 13 deletions
diff --git a/biology/biococoa/Makefile b/biology/biococoa/Makefile
index 01c8dc882ebf..56d59186ea8f 100644
--- a/biology/biococoa/Makefile
+++ b/biology/biococoa/Makefile
@@ -2,7 +2,7 @@
PORTNAME= biococoa
PORTVERSION= 2.2.2
-PORTREVISION= 0
+PORTREVISION= 1
CATEGORIES= biology gnustep
MASTER_SITES= http://bioinformatics.org/biococoa/downloads/ ${MASTER_SITE_DEBIAN}
MASTER_SITE_SUBDIR= pool/main/b/biococoa.app
diff --git a/biology/boinc-simap/Makefile b/biology/boinc-simap/Makefile
index 9da8f766e423..8a91cfbe87d1 100644
--- a/biology/boinc-simap/Makefile
+++ b/biology/boinc-simap/Makefile
@@ -3,7 +3,7 @@
PORTNAME= boinc-simap
PORTVERSION= ${SIMAP_VERSION}.${HMMER_VERSION}
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://boincsimap.org/boincsimap/download/
DISTNAME= ${SIMAP_BINARY} ${HMMER_BINARY}
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index a21d0a3c3504..7f6a440b11e6 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
PORTNAME= crux
PORTVERSION= 1.2.0
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology python
MASTER_SITES= http://www.canonware.com/download/Crux/
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index c5fce0e78d66..832b597c5c5a 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
PORTNAME= molden
PORTVERSION= 5.0.7
-PORTREVISION= 1
+PORTREVISION= 2
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile
index 49bc9cd877a3..ce688ec8557d 100644
--- a/biology/ortep3/Makefile
+++ b/biology/ortep3/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ortep3
PORTVERSION= 1.0.3
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/ortep/:Z \
ftp://ftp.ornl.gov/pub/ortep/src/:f
diff --git a/biology/platon/Makefile b/biology/platon/Makefile
index b04e30693d23..776c336a7704 100644
--- a/biology/platon/Makefile
+++ b/biology/platon/Makefile
@@ -3,6 +3,7 @@
PORTNAME= platon
PORTVERSION= 2014.07.13
+PORTREVISION= 1
CATEGORIES= biology
# Please note that the upstream vendor does not perform any discernible
# versioning. Therefore, the distfile has to be hosted elsewhere in order
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index e980cc385684..f3ff432ea292 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -3,7 +3,7 @@
PORTNAME= plink
PORTVERSION= 1.07
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile
index 959ddb6f4669..4455619e125b 100644
--- a/biology/protomol/Makefile
+++ b/biology/protomol/Makefile
@@ -3,7 +3,7 @@
PORTNAME= protomol
PORTVERSION= 2.0.3
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= biology
MASTER_SITES= SF/${PORTNAME}/ProtoMol/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}-tar.gz
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 231900cd2d4d..28f7598b2f14 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi88
PORTVERSION= 1.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
DISTNAME= ${PORTNAME}
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile
index 1388815946f7..6e4595f8ea01 100644
--- a/biology/py-biopython/Makefile
+++ b/biology/py-biopython/Makefile
@@ -3,7 +3,7 @@
PORTNAME= biopython
PORTVERSION= 1.60
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= biology python
MASTER_SITES= http://www.biopython.org/DIST/
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/pycogent/Makefile b/biology/pycogent/Makefile
index 7f6f41e76b59..576a2a4da6d6 100644
--- a/biology/pycogent/Makefile
+++ b/biology/pycogent/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pycogent
PORTVERSION= 1.5.3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology python
MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION}
DISTNAME= PyCogent-${PORTVERSION}
diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile
index 011a3256229e..3ba4851e29fc 100644
--- a/biology/pyfasta/Makefile
+++ b/biology/pyfasta/Makefile
@@ -3,6 +3,7 @@
PORTNAME= pyfasta
PORTVERSION= 0.5.2
+PORTREVISION= 1
CATEGORIES= biology python
MASTER_SITES= CHEESESHOP
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index e2ad97a52095..5a4ce3057422 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -3,6 +3,7 @@
PORTNAME= seaview
PORTVERSION= 4.5.2
+PORTREVISION= 1
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://doua.prabi.fr/software/seaview_data/ \
diff --git a/biology/seqan/Makefile b/biology/seqan/Makefile
index 8bd6215c0fca..2c56f9c1b52a 100644
--- a/biology/seqan/Makefile
+++ b/biology/seqan/Makefile
@@ -3,7 +3,7 @@
PORTNAME= seqan
PORTVERSION= 1.3.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= http://ftp.seqan.de/releases/
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index 24f8c0e8e8c2..5de83fb7f752 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
PORTNAME= t_coffee
PORTVERSION= 9.03
DISTVERSIONSUFFIX= .r1318
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/%SUBDIR%/
MASTER_SITE_SUBDIR= Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 2532bfdfb905..0e061bf530b5 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
PORTNAME= tinker
PORTVERSION= 6.2.6
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 90888ddf36a6..49c530949db0 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -4,6 +4,7 @@
PORTNAME= treeviewx
PORTVERSION= ${DISTVERSION}.1s20100823
DISTVERSION= 0.5
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= GOOGLE_CODE
DISTNAME= tv-${DISTVERSION}
diff --git a/biology/ugene/Makefile b/biology/ugene/Makefile
index 0bde5ed60d57..c284d2df992d 100644
--- a/biology/ugene/Makefile
+++ b/biology/ugene/Makefile
@@ -3,6 +3,7 @@
PORTNAME= ugene
DISTVERSION= 1.14.0
+PORTREVISION= 1
CATEGORIES= biology science
MASTER_SITES= http://ugene.unipro.ru/downloads/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
generated by cgit v1.2.3 (git 2.25.1) at 2024-12-14 08:53:23 +0000