diff options
Diffstat (limited to 'biology/emboss/files/patch-dbxgcg.c')
| -rw-r--r-- | biology/emboss/files/patch-dbxgcg.c | 96 |
1 files changed, 96 insertions, 0 deletions
diff --git a/biology/emboss/files/patch-dbxgcg.c b/biology/emboss/files/patch-dbxgcg.c new file mode 100644 index 000000000000..5856843c57e8 --- /dev/null +++ b/biology/emboss/files/patch-dbxgcg.c @@ -0,0 +1,96 @@ +--- emboss/dbxgcg.c.orig Mon Jan 23 12:22:30 2006 ++++ emboss/dbxgcg.c Thu Dec 22 13:13:18 2005 +@@ -2,7 +2,7 @@ + ** + ** Index flatfile databases + ** +-** @author: Copyright (C) Alan Bleasby (ableasby@hgmp.mrc.ac.uk) ++** @author Copyright (C) Alan Bleasby (ableasby@hgmp.mrc.ac.uk) + ** @@ + ** + ** This program is free software; you can redistribute it and/or +@@ -136,6 +136,7 @@ + + AjPBtId idobj = NULL; + AjPBtPri priobj = NULL; ++ AjPBtHybrid hyb = NULL; + + + embInit("dbxgcg", argc, argv); +@@ -156,7 +157,8 @@ + + idobj = ajBtreeIdNew(); + priobj = ajBtreePriNew(); +- ++ hyb = ajBtreeHybNew(); ++ + + nfields = embBtreeSetFields(entry,fieldarray); + embBtreeSetDbInfo(entry,dbname,dbrs,datestr,release,dbtype,directory, +@@ -204,12 +206,12 @@ + if(entry->do_id) + { + ajStrToLower(&entry->id); +- ajStrAssS(&idobj->id,entry->id); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->refoffset = entry->reffpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->idcache,idobj); ++ ajStrAssS(&hyb->key1,entry->id); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->refoffset = entry->reffpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->idcache,hyb); + } + + if(entry->do_accession) +@@ -217,12 +219,12 @@ + while(ajListPop(entry->ac,(void **)&word)) + { + ajStrToLower(&word); +- ajStrAssS(&idobj->id,word); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->refoffset = entry->reffpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->accache,idobj); ++ ajStrAssS(&hyb->key1,word); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->refoffset = entry->reffpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->accache,hyb); + ajStrDel(&word); + } + } +@@ -232,12 +234,12 @@ + while(ajListPop(entry->sv,(void **)&word)) + { + ajStrToLower(&word); +- ajStrAssS(&idobj->id,word); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->refoffset = entry->reffpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->svcache,idobj); ++ ajStrAssS(&hyb->key1,word); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->refoffset = entry->reffpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->svcache,hyb); + ajStrDel(&word); + } + } +@@ -303,7 +305,8 @@ + + ajBtreeIdDel(&idobj); + ajBtreePriDel(&priobj); +- ++ ajBtreeHybDel(&hyb); ++ + ajExit(); + + return 0; |