ElmerSolver - the Solution of Partial Differential Equations.

ElmerSolver is thus an independent module that processes the computational
mesh and the model input file containing references to the selected
equations and model parameters. ElmerSolver makes the equations into a
discrete form, handles coupled systems, non-linearities and
time-dependences, and provides output data for visualization.

Submitted by:	Pedro F. Giffuni <giffunip@asme.org>

7 files changed, 180 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 64d1edd5b51b..79ea00261a97 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -18,6 +18,7 @@
     SUBDIR += devisor
     SUBDIR += dft++
     SUBDIR += elmer-eio
+    SUBDIR += elmer-fem
     SUBDIR += elmer-hutiter
     SUBDIR += elmer-matc
     SUBDIR += elmer-meshgen2d
diff --git a/science/elmer-fem/Makefile b/science/elmer-fem/Makefile
new file mode 100644
index 000000000000..caafaef05332
--- /dev/null
+++ b/science/elmer-fem/Makefile
@@ -0,0 +1,49 @@
+# New ports collection makefile for:	elmer-fem
+# Date created:		5 Jan 2006
+# Whom:			Pedro Giffuni <giffunip@asme.org>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	fem
+PORTVERSION=	5.0.2
+CATEGORIES=	science tk84
+MASTER_SITES=	ftp://ftp.funet.fi/pub/sci/physics/elmer/
+PKGNAMEPREFIX=	elmer-
+
+MAINTAINER=	giffunip@asme.org
+COMMENT=	FEM solver for use in the ELMER FEM package
+
+BUILD_DEPENDS=	${FC}:${PORTSDIR}/lang/gfortran	\
+		${LOCALBASE}/lib/libmatc.a:${PORTSDIR}/science/elmer-matc	\
+		${LOCALBASE}/lib/libblas.a:${PORTSDIR}/math/elmer-mathlibs	\
+		${LOCALBASE}/lib/liblapack.a:${PORTSDIR}/math/elmer-mathlibs	\
+		${LOCALBASE}/lib/libumfpack.a:${PORTSDIR}/math/elmer-umfpack	\
+		${LOCALBASE}/lib/libeiof.a:${PORTSDIR}/science/elmer-eio	\
+		${LOCALBASE}/lib/libhuti.a:${PORTSDIR}/science/elmer-hutiter
+RUN_DEPENDS=	${MACHINE_ARCH}-portbld-freebsd${OSREL}-ElmerGrid:${PORTSDIR}/science/elmergrid \
+		${MACHINE_ARCH}-portbld-freebsd${OSREL}-Mesh2D:${PORTSDIR}/science/elmer-meshgen2d
+
+USE_GCC=	4.1+
+WITH_FORTRAN=	yes
+FC=	${LOCALBASE}/bin/gfortran41
+F77=	${FC}
+
+USE_AUTOTOOLS=	autoconf:259
+GNU_CONFIGURE=	yes
+CONFIGURE_ENV+=	FC=${FC} F77=${FC} FCFLAGS=${FCFLAGS}
+USE_GMAKE=	yes
+ALL_TARGET=
+INSTALLS_SHLIB=	yes
+
+DATADIR=	${PREFIX}/share/elmersolver
+PLIST_SUB=	ARCH=${MACHINE_ARCH}
+
+.include <bsd.port.pre.mk>
+
+.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
+CFLAGS+=	-fPIC
+FCFLAGS+=	-fPIC
+.endif
+
+.include <bsd.port.post.mk>
diff --git a/science/elmer-fem/distinfo b/science/elmer-fem/distinfo
new file mode 100644
index 000000000000..2e36a272f9bf
--- /dev/null
+++ b/science/elmer-fem/distinfo
@@ -0,0 +1,3 @@
+MD5 (fem-5.0.2.tar.gz) = 562bb027d64ed049bd874c2da72ee47a
+SHA256 (fem-5.0.2.tar.gz) = 58d1ec237ae46f162543c3981b292f5796a24363c7208064d2b8b283b8dd00ff
+SIZE (fem-5.0.2.tar.gz) = 4142887
diff --git a/science/elmer-fem/files/patch-acx_elmer.m4 b/science/elmer-fem/files/patch-acx_elmer.m4
new file mode 100644
index 000000000000..af022f9aa159
--- /dev/null
+++ b/science/elmer-fem/files/patch-acx_elmer.m4
@@ -0,0 +1,11 @@
+--- acx_elmer.m4.orig	Sun Feb  5 18:29:13 2006
++++ acx_elmer.m4	Sun Feb  5 18:31:24 2006
+@@ -1384,7 +1384,7 @@
+   ;;
+   *-*-freebsd*)
+     SH_LD="$CC"
+-    SH_LDFLAGS="-shared"
++    SH_LDFLAGS="-shared -fPIC"
+   ;;
+   alpha*-dec-osf*)
+     SH_LDFLAGS="-shared"
diff --git a/science/elmer-fem/files/patch-configure.in b/science/elmer-fem/files/patch-configure.in
new file mode 100644
index 000000000000..3db42222e6a3
--- /dev/null
+++ b/science/elmer-fem/files/patch-configure.in
@@ -0,0 +1,11 @@
+--- configure.in.orig	Wed Feb 15 18:56:07 2006
++++ configure.in	Wed Feb 15 18:56:45 2006
+@@ -68,7 +68,7 @@
+ FCFLAGS="$FCFLAGS -I."
+ FFLAGS="$FCFLAGS -I."
+ ELMER_HOME="$prefix"
+-FCPPFLAGS="-P $TRADITIONAL_CPP_FLAGS -I. -I$prefix/include -DFULL_INDUCTION -DUSE_ARPACK"
++FCPPFLAGS="-P -traditional -I. -I$prefix/include -DFULL_INDUCTION -DUSE_ARPACK"
+ TESTS_FCFLAGS=""
+ 
+ ELMER_LIBERRORMSG="wasn't found, make sure it is in the prefix, or CFLAGS and LIBS are correct if they are somewhere else."
diff --git a/science/elmer-fem/pkg-descr b/science/elmer-fem/pkg-descr
new file mode 100644
index 000000000000..e213b4caed4e
--- /dev/null
+++ b/science/elmer-fem/pkg-descr
@@ -0,0 +1,9 @@
+ElmerSolver - the Solution of Partial Differential Equations.
+
+ElmerSolver is thus an independent module that processes the computational
+mesh and the model input file containing references to the selected
+equations and model parameters. ElmerSolver makes the equations into a
+discrete form, handles coupled systems, non-linearities and
+time-dependences, and provides output data for visualization.
+
+WWW:	http://www.csc.fi/elmer/elmersolve/
diff --git a/science/elmer-fem/pkg-plist b/science/elmer-fem/pkg-plist
new file mode 100644
index 000000000000..ae2fa2be6831
--- /dev/null
+++ b/science/elmer-fem/pkg-plist
@@ -0,0 +1,96 @@
+bin/%%ARCH%%-portbld-freebsd%%OSREL%%-SC2Elmer
+bin/ElmerSolver
+bin/GebhardtFactors
+bin/ViewFactors
+bin/elmerf90
+lib/libelmersolver.so
+%%DATADIR%%/include/adaptive.mod
+%%DATADIR%%/include/bandmatrix.mod
+%%DATADIR%%/include/bandwidthoptimize.mod
+%%DATADIR%%/include/coordinatesystems.mod
+%%DATADIR%%/include/crsmatrix.mod
+%%DATADIR%%/include/defutils.mod
+%%DATADIR%%/include/differentials.mod
+%%DATADIR%%/include/diffuseconvective.mod
+%%DATADIR%%/include/diffuseconvectivegeneral.mod
+%%DATADIR%%/include/directsolve.mod
+%%DATADIR%%/include/eigensolve.mod
+%%DATADIR%%/include/elementdescription.mod
+%%DATADIR%%/include/elementutils.mod
+%%DATADIR%%/include/freesurface.mod
+%%DATADIR%%/include/gebhardtfactorglobals.mod
+%%DATADIR%%/include/generalutils.mod
+%%DATADIR%%/include/globmat.mod
+%%DATADIR%%/include/hashtable.mod
+%%DATADIR%%/include/integration.mod
+%%DATADIR%%/include/interpolation.mod
+%%DATADIR%%/include/itersolve.mod
+%%DATADIR%%/include/linearalgebra.mod
+%%DATADIR%%/include/lists.mod
+%%DATADIR%%/include/ludecomposition.mod
+%%DATADIR%%/include/mainutils.mod
+%%DATADIR%%/include/materialmodels.mod
+%%DATADIR%%/include/maxwell.mod
+%%DATADIR%%/include/maxwellaxis.mod
+%%DATADIR%%/include/maxwellgeneral.mod
+%%DATADIR%%/include/meshutils.mod
+%%DATADIR%%/include/messages.mod
+%%DATADIR%%/include/modeldescription.mod
+%%DATADIR%%/include/multigrid.mod
+%%DATADIR%%/include/navierstokes.mod
+%%DATADIR%%/include/navierstokescylindrical.mod
+%%DATADIR%%/include/navierstokesgeneral.mod
+%%DATADIR%%/include/paralleleigensolve.mod
+%%DATADIR%%/include/parallelutils.mod
+%%DATADIR%%/include/pelementbase.mod
+%%DATADIR%%/include/pelementmaps.mod
+%%DATADIR%%/include/radiation.mod
+%%DATADIR%%/include/radiationfactorglobals.mod
+%%DATADIR%%/include/solverutils.mod
+%%DATADIR%%/include/sparitercomm.mod
+%%DATADIR%%/include/spariterglobals.mod
+%%DATADIR%%/include/spariterprecond.mod
+%%DATADIR%%/include/sparitersolve.mod
+%%DATADIR%%/include/stressgeneral.mod
+%%DATADIR%%/include/stresslocal.mod
+%%DATADIR%%/include/timeintegrate.mod
+%%DATADIR%%/include/types.mod
+%%DATADIR%%/include/viewfactorglobals.mod
+@dirrm %%DATADIR%%/include
+%%DATADIR%%/lib/AdvectionDiffusion.so
+%%DATADIR%%/lib/ArtificialCompressibility.so
+%%DATADIR%%/lib/DCRComplexSolve.so
+%%DATADIR%%/lib/ElasticSolve.so
+%%DATADIR%%/lib/ElectricForce.so
+%%DATADIR%%/lib/Electrokinetics.so
+%%DATADIR%%/lib/EliminateDirichlet.so
+%%DATADIR%%/lib/EliminatePeriodic.so
+%%DATADIR%%/lib/EnergyRelease.so
+%%DATADIR%%/lib/FDiffusion.so
+%%DATADIR%%/lib/FDiffusion3D.so
+%%DATADIR%%/lib/FluidicForce.so
+%%DATADIR%%/lib/FreeSurfaceReduced.so
+%%DATADIR%%/lib/FreeSurfaceSolver.so
+%%DATADIR%%/lib/HelmholtzBEM.so
+%%DATADIR%%/lib/HelmholtzSolve.so
+%%DATADIR%%/lib/KESolver.so
+%%DATADIR%%/lib/MagneticSolve.so
+%%DATADIR%%/lib/PoissonBEM.so
+%%DATADIR%%/lib/PoissonBoltzmannSolve.so
+%%DATADIR%%/lib/RateOfChange.so
+%%DATADIR%%/lib/ReloadInput.so
+%%DATADIR%%/lib/ResultOutputSolve.so
+%%DATADIR%%/lib/RigidBodyReduction.so
+%%DATADIR%%/lib/SOLVER.KEYWORDS
+%%DATADIR%%/lib/SaveData.so
+%%DATADIR%%/lib/Smitc.so
+%%DATADIR%%/lib/StatCurrentSolve.so
+%%DATADIR%%/lib/StatElecSolve.so
+%%DATADIR%%/lib/Stokes.so
+%%DATADIR%%/lib/StreamSolver.so
+%%DATADIR%%/lib/StressSolve.so
+%%DATADIR%%/lib/TransportEquation.so
+%%DATADIR%%/lib/elements.def
+%%DATADIR%%/lib/libelmersolver.so
+@dirrm %%DATADIR%%/lib
+@dirrm %%DATADIR%%